AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02344 ATGACTAGCATCAAGCTTGAGGTTGTCTCAGAAGAACGGTCTCTACATAAATGGCGTGTTCTCTTGAAAGAAGACGTGTTTGCTTCATTTATATCGAAAGGAGGTGTATTGTTGGCTCATCTTCACAACCCTTGTGTGAATTGGCTCCAAACCGAAGCATGTTATGTTCTAAACTCCGAGTTACCAAAACTAGAAAACAACAGCCTACGAGTTTGTGTCGAGAATGGAAAGGTTTTGGAGATTAGTGGGCTATATAAGCCCAAAGGAGATTCGCGAGCAACGGATTGGAGGAGTGGCAAATGGTGGGAACATGGCTTTGTTCGAAGACTAGAATTGCCCGAAAATGCAGACGGGAAGAAAATCGAGGCGTATGTGAACAACAACGACACGGTTTTGGACATTAGGATTCCAAAGACTTCATTGGAATGTGATCACATCCCTCAAGGAAACAATTTAGTTACCAAAGAATCTGCATCTACAAGCACTTGA 489 42.74 MTSIKLEVVSEERSLHKWRVLLKEDVFASFISKGGVLLAHLHNPCVNWLQTEACYVLNSELPKLENNSLRVCVENGKVLEISGLYKPKGDSRATDWRSGKWWEHGFVRRLELPENADGKKIEAYVNNNDTVLDIRIPKTSLECDHIPQGNNLVTKESASTST 162
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02344 162 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 36 156 IPR002068 -
Ecan3g02344 162 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 3 36 - -
Ecan3g02344 162 SUPERFAMILY HSP20-like chaperones 27 140 IPR008978 -
Ecan3g02344 162 Gene3D - 14 145 IPR008978 -
Ecan3g02344 162 Pfam Hsp20-alpha crystallin family 48 142 IPR002068 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02344 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2107912 Ecan Ecan3g02344 Ecan-Chr3:34070858 Ecan6g02038 Ecan-Chr6:31537602
2126831 Ecan Ecan3g02343 Ecan-Chr3:34070855 Ecan3g02344 Ecan-Chr3:34070858