AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan3g02350 ATGGAATCGATAATAGCAAGGGCGCTGGAGTATACTTTAAAGTACTGGCTTAAATCATTCACTAGAGATCAGTTCAAGTTACAAGGACGCACTGTTCAGCTCTCCAATTTAGATATAAATGGTGATGCTCTCCATGCGAGTCTCGGATTGCCTCCAGCATTGAATGTTAAAACCGCAAAACTCGGGAAATTAGAGATTATACTTCCTTATTTGAGCAATGTACAAGTTGAGCCAATTGTTGTGCAAATTGATAAGCTTGATTTGGTTTTGGAGGAAAATGATGATTTGGATGCATATAAGAGTACAGACAGTGCACAAACGCCATCCAGTCCTTCAAAAGGCAGTGGATATGGATTTGCGGACAAGATTGCAGATGGGATGACACTGGAAGTACGGACTGTCAATCTTTTATTGGAGACACATGGGGGTGCTCGACATCGGGGAGGAGCAACTTGGGCATCACCAATGGCATCTATTACCATACGCAACCTCTTGCTATATACCACAAATGAGAACTGGCAGGTGGTAAACCTTAAAGAAGCGAGGGATTTTTCAAATGACAAGAAGTTCATCTATGTTTTTAAAAAACTTGAATGGGAGCATCTATCCATCGACCTCTTGCCTCACCCTGATATGTTTGCAGCGTTTTCTGAAGGTGCATTTAAGGATGACGATGGTGCAAAGCGAGTATTCTTTGGCGGGGAGCGGTTCCTAGAAGGAATTTCCGGAGAAGCTTATATTACGATACAAAGGACAGAGCTTAATAGTCCACTAGGGTTGGAACTCCAGCTACATATTACTGAAGCTGTGTGCCCAGCTTTGAGTGAGCCAGGACTGCGAGCTCTTCTTCGTTTTTTTACGGGATTGTATGTCTGTCTAAATAGAGGAGATCTGAATCCAAATGCTCAAGAGCGATCAGCAGAAGCTGCAGGGCGTACACTGGTCTCTATTATGGTGGACCATATATTTTTTTGCATCAAGGATACTGATTTCCAGTTAGATCTTTTGGTGCAGTCGCTTCTCTTTTCCCGGGCAAGTATTTCTGATGGAGAGATAACCAAATGCTTAACTCGGGTGATGATGGGTGGACTATTTCTGCGGGATACTTCCTCTCGTCCACCATGCGCTCTAGTGCAACCGTCAATGCAGGATGCTGCAGATGAACCACTGCAAATTCCAGATTTTGGAAAGAACTTCTGTCCTCCAATATACCCGTTAGGGGATCAGCAGTGGAAACTAAGTGAACGCGCTCCACTTATGTCCCTCCATTGTCTTCAGTTTATGCCTTCACCTAGCCCACCATCCTTCTCTTCACAAACTGTCGTTGACTGCCAGCCTCTTATGATACATCTTCAAGAAGAGTCGTGTCTAAGAATTTTATCCTTACTAGCTGATGGAATCGTGGTAAATTCTGGTGGTATTTTACCAGATATTTCAGTCAACTCCCTTGAAGTCAAAGTCAAAGGATTAGATATTACTGTTCCATTAGAAAATCAAAATGACAGCTCCTTTAGTGGAGCAAGACTTCATATTGAGAACCTATTCTTTCATGATTCACCTTTCCTGAGGCTTAGACTGCTCAATCTTGACAAGGATCCTGCATGCTTCTGCCTCTGGAAGGGTCAACCAATTGATGCCAGCCAAAAAAAATGGACAAGTGGAGCTTCTTTATTCGATATGTCTCTAGAAACTTGTGATAGCTTAAAAGGAGTAAATGGGTCCCGTTCACAATCTTCAAAGTTGTGGAAATGTGTCGAGGTAAAAGGTGTTTGTATTCAGGTTGCAATGGTAACAGCAGATGGAAGCCCATTGATAGACGTCCCTCCTCCAGGAGGAGTTGTTAGAGTTGGAGTTGCTTGTGAACAATATCTCTCCAACACTTCTGTTGAGCAACTTTTTTTTGTATTGGATTTATATACGTATTTTGATACAGTCAGCGAGAAATTGGCCGTGGTTGGAAGAAGTAAACAGAAGAAGGCGGTGAAGCATGAACTTTCTAATGGAAGCTTGATCGAAAAGGCTCCTGGTGATACTGCAGTTAGTTTAGCAGTTAAGGACCTTAAACTTACATTTTTAGAATCTTCCTTGGTGGATTTTCAGGAAATGCCTCTAGTTCAGTTTGGCGGAGATGATCTATTGGTGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCCATTTCATCAACTGTAAGGTGGGACAGTGTTCAGGTTGACTGTGCCGAAACTGAGACAGCCCCAGTACATTCGAACAGTTTGGTGTCAAATGCTACAGAAGATTTTCTTCCTGCTCTAAATGGCTGTCCTAAACTGAGAGCTGTCTTTTGGGTGCAAAATGAAACAAATTTTCCGTTTTTGAATTTAAGCATGGTGCATGTTATTCCTTATAATGCACGAGATACCGAGTGTCATACGTTAAGTGTGTCGGCTTGTATCGCCGGCGTACGTCTTGCAGGAGGCATGAATTATGCCGAAGCTCTCCTACATCGCTTTGGAATTTTAGGACAAGATGGTGGGCCAGGGGATGGGCTCTCCAAGGGTTTGGAACATCTATCTGTGGGCCCATTGTCGAAACTTTTCAAAGCATCACCTTTGCTTGTTGAGGCCAGGGAGAGTAAAAGTGAAAGCATAGAGGAGAATCATAGTGGACATTTGCTCTTGGGTGCACCTGATGATGTGGAGATATCTCTAGAATTGAAGGACTGGTTATTTGCATTGGAGGGTGCAGAGATGGCAGAAAGGGCATGGCTCTACAGTCCTGAGGATTTTTACAGAGAAGAGAGGTGCTGGCACACAACTTTTGACAGTTTTAAAGTGAAGGCAAACAGCAGCAAAAGACACTTGGTTAATGGCAAAAAGAGTTTATCTGGTGCACTCAAGTATCCTATAGAATCAGTGACGGTCGGTGTTGAAGGATTAAAGACGTTGAAACCCCAGCAGCAGAAAGTAGCACAACAAAATGGGCACAAACAAACTGTCGAGTCACATGGTGGGGTAGATCTTGAAGCTGACATAGTTTTAAACGAAGATGATGGTGTCAATGGGATGATCAGTTGGGTGGTGGAAAGCTTAAAGTTTTCTGTGAAACATCCGGTTGAGGCAATTGTAACCAAGGATGAGCTGCAACATGTTGCTCAATTATGCAAGTCAGAAGTTGATTCCATGGGGAGAATAACTGCTGGGGCTTTGCGTGTGTTAAAGTTAGAAGGATCAGTTGGTCAGACAACGATGGATCAGCTGAGCAGTCTTGGAAGTGAAGGGTTTGAAAAGATCTTCTCACCAGTTAACCATCGCAGAGATAGTAATGCTTCTGGTGGAATGAGCCCTTTTTCCCTAGGGGCTTCTGAAAACCAACTCTCCTCATCCTTTAATACAACATTATCCTCTCTCAAGGCTGCATTATTAGAATCACAAACAAATTGTGCATCCCTTGCTTCTGAGTTAAGCATGTCTGAACCACACCTTCGTAGTGTGGAACAACTCGCCCAGAAACTAGAGAATATGCAACAATTGTTACTGAAGCTGCAGTCTCGGGTATAG 3540 43.25 MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLSNLDINGDALHASLGLPPALNVKTAKLGKLEIILPYLSNVQVEPIVVQIDKLDLVLEENDDLDAYKSTDSAQTPSSPSKGSGYGFADKIADGMTLEVRTVNLLLETHGGARHRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGLYVCLNRGDLNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLDLLVQSLLFSRASISDGEITKCLTRVMMGGLFLRDTSSRPPCALVQPSMQDAADEPLQIPDFGKNFCPPIYPLGDQQWKLSERAPLMSLHCLQFMPSPSPPSFSSQTVVDCQPLMIHLQEESCLRILSLLADGIVVNSGGILPDISVNSLEVKVKGLDITVPLENQNDSSFSGARLHIENLFFHDSPFLRLRLLNLDKDPACFCLWKGQPIDASQKKWTSGASLFDMSLETCDSLKGVNGSRSQSSKLWKCVEVKGVCIQVAMVTADGSPLIDVPPPGGVVRVGVACEQYLSNTSVEQLFFVLDLYTYFDTVSEKLAVVGRSKQKKAVKHELSNGSLIEKAPGDTAVSLAVKDLKLTFLESSLVDFQEMPLVQFGGDDLLVEVTHRTLGGAMAISSTVRWDSVQVDCAETETAPVHSNSLVSNATEDFLPALNGCPKLRAVFWVQNETNFPFLNLSMVHVIPYNARDTECHTLSVSACIAGVRLAGGMNYAEALLHRFGILGQDGGPGDGLSKGLEHLSVGPLSKLFKASPLLVEARESKSESIEENHSGHLLLGAPDDVEISLELKDWLFALEGAEMAERAWLYSPEDFYREERCWHTTFDSFKVKANSSKRHLVNGKKSLSGALKYPIESVTVGVEGLKTLKPQQQKVAQQNGHKQTVESHGGVDLEADIVLNEDDGVNGMISWVVESLKFSVKHPVEAIVTKDELQHVAQLCKSEVDSMGRITAGALRVLKLEGSVGQTTMDQLSSLGSEGFEKIFSPVNHRRDSNASGGMSPFSLGASENQLSSSFNTTLSSLKAALLESQTNCASLASELSMSEPHLRSVEQLAQKLENMQQLLLKLQSRV 1179
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan3g02350 1179 Pfam VPS13-like, N-terminal 1 102 IPR026854 -
Ecan3g02350 1179 PANTHER UNCHARACTERIZED 1 1176 IPR026728 -
Ecan3g02350 1179 Coils Coil 1158 1178 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan3g02350 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
84928 Ecan3g02350 Ecan8g02438
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2137692 Ecan Ecan8g02438 Ecan-Chr8:35853517 Ecan3g02350 Ecan-Chr3:34120493
2143720 Ecan Ecan3g02350 Ecan-Chr3:34120493 Ecan8g02437 Ecan-Chr8:35847200