AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan6g01187 ATGCCGGTGGCGCGACCAGAAACGTCTGATTCCAGAATTATTGCTCATGTCGACATGGATTGCTTTTATGTTCAAGTGGAGCAACGAAAACAACCTCATCTAAGAGGTCAGCCAACGGCTGTAGTACAATACAATTCTTGGAAAGGTGGAGGTCTGATTGCTGTCGGCTACGAGGCCAGGAAAGATGGGGTGAAACGCTCAATGAGAGGTGATGAGGCAAAGAAAGCTTGTCCACAAATTCAGTTGGTCCAAGTCCCTGTGTCTCGTGGTAAAGCTGACTTGACCATATATCGGAATGCAGGTTCAGAGGTTGTTTCCATTCTTTCAAGGAAGGGGCGATGTGAGCGCGCATCGATTGATGAAGTGTACCTGGACCTCACTGATGCTGCTGAAAGAATGTTGAAAGAAACACCATTAGAAAGCTTGGAGAGTATCAGTGAAGAAGTTCTCAAATCACATGTTTTGGGGCTTAAAGCGGATGGAAAAGATGACAAAGAAACTGTGATGGAATGGCTGCAGCGGCCAGATGCTGATCACCGTGATAAGCTGCTAGCATGTGGAGCTATTATTGTTGCTGAACTCAGGTTGCAAGTTCTACGAGAGACTGAATTTACATGTTCTGCAGGGATTGCTCATAACAAAATGCTGGCTAAACTAGCAAGTGGTATGAATAAACCTGCACAACAAACTATTGTCACATCCTCGTCAGTGAAAGATCTTCTTGAACCGTTGCCTATAAAGAAGATGAAACAACTTGGTGGGAAGCTTGGGAGCTCTCTGCAAACTGACCTTGGTGTAAATACTGTTGGGGATTTATTGCAGTTTTCTGAGGAAAAACTACAAGAGTTTTATGGTGTCAATACCGGCACCTGGCTGTGGAATATTGCGAGGGGTATTAGCGGGGATGAAGTTGAGGGTCGTGTGCTCCCTAAGAGCCATGGGTCCGGGAAGACATTTCCTGGACCTAGGGCTTTAAAAACTCTTTCTGCTGTTGAAAATTGGCTGAAAGAACTTTGTGATGAATTAAGTGAACGCCTTCAATCGGATCTGGAAAAGAATAAACGAATTGCCCATACACTTACACTGCATGCTAATGCTTATAAGTCTACAGATACAGATTCACACAAAAAGTTCCCTTCAAAATCATGTCCTTTGAGATATGGGGCAGGAAAGATGCAAGAAGATGCGGTAAATCTTTTCCAAGCTGGGTTACGTGAATACCTTGGGTCATACACAAATCCCTTGGCAAACCAGTGCGGTGGATGGGGAATTACTAATCTGTCTGTTTCAGCCTGCAAAATTGTTGCTATACCATCTGGTACTTCTTCGATCACAAGGTACTTCCATGGTCCTGATCAGTTACACGCTTCATCAGAACCGCCTGTTGAAAAAATTGTTCCTGAAGATGATAATTTATCACCATCAAGATCTGAAAGACCTTGTGTCTCTCATCAGACTGAACAGCAAACTGATTATGATGTGGAACCAACTTCAATTGCACATGATATCTCTAGTTCCGACAGGCATGAGAATGCATGTAAAGATGAGGCTAGTGGCGATTTCACTAGAGAAGCTTTCCAGTTATCTTCAGGAACTGATAGCTGTTCGACTTCGAAACAGAATGGACTACAACCAGGCTTACCTGAGAAAGAAACGAAGATAAAGCACTCAAATAATGAAATAAGATTATACAACCAGAAAAGAAAGACAACAAAAGTTAATGGAACATCTTCCATCCTGAGATTTCTCCAAAGCAATGCTTACTCTTCATCAAAACAAGAAAATTCCAGTGCCTCTCAAGAAACAAATTGCTCACCATCAGGGGTAGAACAACCGAATAAGAAGGGTGAAAACTTGACCCAGAGTCAAAATGAGAGAACAAATACATGGAGTTACAATGTTAATGAAATCGACCAATCCGTGGTTGATGAGTTACCACCGGAGATACAGGAAGAACTTCGTACTTGGGTTCGGCCGCAGAAGCGACAAAACATTGTAAAACGAGACTTCATGTGTTACTGGGGATTCCACCTGAGCCAACTTTGTTAA 2049 42.9 MPVARPETSDSRIIAHVDMDCFYVQVEQRKQPHLRGQPTAVVQYNSWKGGGLIAVGYEARKDGVKRSMRGDEAKKACPQIQLVQVPVSRGKADLTIYRNAGSEVVSILSRKGRCERASIDEVYLDLTDAAERMLKETPLESLESISEEVLKSHVLGLKADGKDDKETVMEWLQRPDADHRDKLLACGAIIVAELRLQVLRETEFTCSAGIAHNKMLAKLASGMNKPAQQTIVTSSSVKDLLEPLPIKKMKQLGGKLGSSLQTDLGVNTVGDLLQFSEEKLQEFYGVNTGTWLWNIARGISGDEVEGRVLPKSHGSGKTFPGPRALKTLSAVENWLKELCDELSERLQSDLEKNKRIAHTLTLHANAYKSTDTDSHKKFPSKSCPLRYGAGKMQEDAVNLFQAGLREYLGSYTNPLANQCGGWGITNLSVSACKIVAIPSGTSSITRYFHGPDQLHASSEPPVEKIVPEDDNLSPSRSERPCVSHQTEQQTDYDVEPTSIAHDISSSDRHENACKDEASGDFTREAFQLSSGTDSCSTSKQNGLQPGLPEKETKIKHSNNEIRLYNQKRKTTKVNGTSSILRFLQSNAYSSSKQENSSASQETNCSPSGVEQPNKKGENLTQSQNERTNTWSYNVNEIDQSVVDELPPEIQEELRTWVRPQKRQNIVKRDFMCYWGFHLSQLC 682
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan6g01187 682 Gene3D - 21 88 - -
Ecan6g01187 682 MobiDBLite consensus disorder prediction 589 629 - -
Ecan6g01187 682 MobiDBLite consensus disorder prediction 476 496 - -
Ecan6g01187 682 MobiDBLite consensus disorder prediction 549 567 - -
Ecan6g01187 682 FunFam DNA polymerase eta 89 232 - -
Ecan6g01187 682 Pfam DNApol eta-Rev1, HhH motif 244 299 - -
Ecan6g01187 682 FunFam Polymerase (DNA directed), eta 246 302 - -
Ecan6g01187 682 MobiDBLite consensus disorder prediction 451 496 - -
Ecan6g01187 682 PIRSF DNA-pol-eta 6 669 - -
Ecan6g01187 682 ProSiteProfiles UmuC domain profile. 14 253 IPR001126 GO:0006281(InterPro)
Ecan6g01187 682 PANTHER DNA POLYMERASE ETA 1 652 IPR052230 GO:0003887(PANTHER)|GO:0005634(PANTHER)|GO:0005657(PANTHER)|GO:0009314(PANTHER)|GO:0035861(PANTHER)|GO:0042276(PANTHER)
Ecan6g01187 682 FunFam DNA polymerase eta 21 88 - -
Ecan6g01187 682 Pfam impB-mucB-samB family 17 221 IPR001126 GO:0006281(InterPro)
Ecan6g01187 682 Pfam impB-mucB-samB family C-terminal domain 310 407 IPR017961 GO:0003684(InterPro)|GO:0006281(InterPro)
Ecan6g01187 682 MobiDBLite consensus disorder prediction 529 570 - -
Ecan6g01187 682 FunFam DNA polymerase eta 304 435 - -
Ecan6g01187 682 SUPERFAMILY DNA-RNA polymerases 8 304 IPR043502 -
Ecan6g01187 682 Gene3D - 304 436 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Ecan6g01187 682 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 309 436 IPR036775 GO:0003684(InterPro)|GO:0006281(InterPro)
Ecan6g01187 682 Gene3D - 89 232 IPR043128 -
Ecan6g01187 682 Gene3D - 246 302 - -
Ecan6g01187 682 MobiDBLite consensus disorder prediction 529 545 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan6g01187 K03509 DNA polymerase eta [EC:2.7.7.7]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr3:28604149 Ecan6g01187 Ecan-Chr6:22846533 dispersed