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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan6g01214 ATGGTAATGAAGCCTGCATGGTTAGAAGGACTAATGGGAGAGAGCTTCTTTGGGATATGTGGAATTCATGAGCACAAAAGGAAAAATGAAAAGAACATATTTTGCTTAGATTGTTGTCAAAGCTTTTGCCCTCATTGCCTTCCTTCTCATCACTCTCATCCCATTCTTCAGGTGAGAAGATATGTTTATCAGGATGTTGTTAGATTAGACGATCTCGAAAAGCTCATTGACTGCTCCTTTGTTCAGTCATATACAATAAACAGTGCAAAGGTGATATTCTTGAACCAAAGGGCACAAACAAGGTCATGCAAGGGCCCTGCCAATTCATGTTTGACCTGTGACAGGATCCTACAAGAGCCATTTCACTTTTGTTCACTATCTTGCAAGGTTGATCACATGGTGCATCAAGGAGAAGATTTGTCTAGTGTTTTGTGTAGGTTTGATGTGACCGATTTTTCCTTCTCCCAATTTGAAGGACTTCAAATGTATGGTTCTGAGTTTGTTGATGAGGATACCCCAAACTACATCCTTGAGGACTCCTTGCAGTTCAAAGACTCGTCGGGCTCTGATGATTACTCTGGCATTTCAAGGATTTCGTATAAACCAGAGATCGAGACAAAGAAGAAGAAGAAAAACAAAGACTACCTTCCTAAATTCTTTTCTTTTAGTAACAGAAGAAAGGGAGCTCCCCAAAGATCACCACTTTCCTAA 711 40.23 MVMKPAWLEGLMGESFFGICGIHEHKRKNEKNIFCLDCCQSFCPHCLPSHHSHPILQVRRYVYQDVVRLDDLEKLIDCSFVQSYTINSAKVIFLNQRAQTRSCKGPANSCLTCDRILQEPFHFCSLSCKVDHMVHQGEDLSSVLCRFDVTDFSFSQFEGLQMYGSEFVDEDTPNYILEDSLQFKDSSGSDDYSGISRISYKPEIETKKKKKNKDYLPKFFSFSNRRKGAPQRSPLS 236
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan6g01214 236 Pfam PLATZ transcription factor 59 130 IPR006734 -
Ecan6g01214 236 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 235 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan6g01214 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr4:22984255 Ecan6g01214 Ecan-Chr6:23121713 dispersed
Ecan Ecan-Chr4:39524786 Ecan6g01214 Ecan-Chr6:23121713 dispersed
Ecan Ecan-Chr5:44513602 Ecan6g01214 Ecan-Chr6:23121713 dispersed
Ecan Ecan-Chr6:23121713 Ecan8g03934 Ecan-Chr8:47054953 dispersed
Ecan Ecan-Chr6:23121713 Ecan5g00339 Ecan-Chr5:3485811 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ecan PLATZ 3.7e-28 No_clan TF PLATZ