AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02654 ATGTTGAACGGATTGAAGACGAAAAGCAGGACCAGCCCATATGTTCACCTAGATTACATTATCAATCTTCTAGAGATTAAGCCGTGGCCTCCATCCAAGTCACTGAGATCTCTTCGGTCTGTATTAATACAATGGGAACACGGTAACAAGAGTTCAGGGTCTACTAAAGCAGTTGTTCCGTCGAATAGTTTTGGTTTGGGTACTGATGATGGTAAAATTGAATTTAATGAATCTTTTAGACTTCATGTAACATTGTCAAGAGACATGTCAGTCAAGTCCGCAGAGTATGATACATTTGTAAAGAATTGCATAGAGTTTAATCTGTATGAACCACGAAGGGATAAAACCGTAAAAGGGCAGTTGTTGGCTACTGCAGTTATAGACTTTGCAGAGTATGGTATTGTTCAAGAGTGTTTGATGATCAGTGTACCTATGAATTGCAAAAGGACTTTTGGTAAGACGGCTCAACCTATGCTCTTTGTTAAAATGCAAGTGGCTGAGAAAAATAATCTTGCAAGGTCTTCATCGACTATAGAGAGTTTATTCAGAGAAGAATCATTGGAGAAGAACCACTCTGAATCTGTTTCCGCATTGATGGATGAAGAGTATGCTGAGGAAGCCGAGACTGTATCTATGACAGATGATGACGACGTTTCCTCTCAGTCTTCTATCGTTGCAGGTTTATCGCTGTTTGGATCCAATGGAAGTTTAACTCCCCCAAGAGAGAATATGTCTGAAGCTATATGTGGAAGACCGGGAAAGGTTAATGATCAAGAAATCTCGGTTCGAGATAAAAGGGCTGCTTATGAAGAACGTATATCATCATCAAAAGATTTGTATTCCGAGATAGAAAATGCTCGTACCACTTTATCAAATCTCCGTAACTCAAGATTCACGATGCTCTCACAAAATGCTGAATCTCATAGCATGAAACTCTTAAAGTCATCTATCGATAGTAATGGAACAGACGAACAGTCTTTTACACAATCCAAAAAGTTGGATGCAAGTCATACTGGTCAAGAAAGTCAAATAATTAAAGATAATGGACGTGATACCGATAGGTTAGACAATGTGAAGTCTGTCAGTTCTTCGTTGGATGCAATAAATAACATCGGATCTATAAGGACAAGTAATGTAATAGCAAACAACGGATCTTTAAGGACAAGTAAAATTTTAGAGAAATTTAAAAATGCTAGTGTTCAAGAACAGAAAAGTCTAAGAAAAGACGTAAGCAAGGTACAAGACTTGGAAAGGAGAGTACAAGCTCTTGAAGGTGAACTGACAGAAGCTGCAGCTATAGAAGTTGGTCTATACTCAATAGTACCTGAGCATGGGAGTTCAATCAATAAAGTCCATTCTCCTGCAAGGCGTCTCTCCAGGCTGTACCTTCATGCATGTAAAGAGAACTCATTAAGGAGAGCTAGTTCGGCGAAAAGTATAGTGTCAGGTCTGATTTTGGTTGTAAAGGCTTGTGGAAGCGATGTTCCAAGGCTGACTTTCTGGTTGTCAAATTCTGTTGTACTAAGAGCAATATTATACAAGTCTTTAAATGGGAGTGAAGGTGAGGACCCTCATATGGTCATTTCCGCTCTTGAAAAAGTTGAATCTTGGATCTTCTCGCGCATTATTGAGTCCATCTGGTGGCAGACATTTGCCCCTTATATGCATTCCGCTGCTGCAAAGGGAATTGCTAGAGTTGTAGAGTCAGAATCTAATAAACATCGTCAAACACCTGATTCACTTGATCACGAGCAAATGAACACTTCATTAGAGCTTTGGAAAACGGCTTTCATGGATGCTTGTGAAAGAATCTGTCCGGTTCGATCTACAGGACATAGTTGTGGTTGCTTGAGTGTGCTGTCTATGTTGATAATGGAGCAATGCGTGGGTAGATTAGATGTAGCCATGTTCAATGCCATTCTTCGTGAACCAGAAGATGAGGTTCCAACAGACCCTTTATCAGATCCCATCAGTGATTCCCGTGTTCTTCCTATTCCTTCAGGGAAAGCGAGCTTTGGAGCCGGTGCACAACTGAAAAAGACGATCGGAAACTGGTCTAGTTGGTTAACCGATCTCTTCGGCTCACCAATCACTTTTCATCTCCTTACTTCACTGAGTGAGCTCATGATGCTTCCAAAGGATATGCTCTTAAGCAATACGATCCGAAAAGAGGTATGTCCTACTATTGGTATACCATTAATAAAGAGGATTGTTGATAGTTTCGTCCCGGATGAGTTTTGCCCCGACCCGATACCTGAGGTGGTGCTAGAAATACTGTATTCAGAGGATTTGATCGAGAGTAGTGAAGATTGTGTCAGAAGTCTTCCATGTGCAGCAACTCCTACTGTATATCACCCTCCTTCTGCATCTTTGATAGGATGCATCTTAGGAGATGATGGAAGCCAGGCTAGATTGTCACGCAGCGGATCATTGACCTTAAGAAAGTCAAATACAAGTGATGATGAGCTTGATGAACTGGATTTACCTTTGACTTCTATCATTGACTCTCCCAGGACAGTAACCTCTTCAACTAAGCACATGTGGACATTAAAAGATATTGATAGTTGCAATACTGTTAGGTATCGACTCCTTAGACAAGTATGGTTGAATTGTGATTAA 2619 40.51 MLNGLKTKSRTSPYVHLDYIINLLEIKPWPPSKSLRSLRSVLIQWEHGNKSSGSTKAVVPSNSFGLGTDDGKIEFNESFRLHVTLSRDMSVKSAEYDTFVKNCIEFNLYEPRRDKTVKGQLLATAVIDFAEYGIVQECLMISVPMNCKRTFGKTAQPMLFVKMQVAEKNNLARSSSTIESLFREESLEKNHSESVSALMDEEYAEEAETVSMTDDDDVSSQSSIVAGLSLFGSNGSLTPPRENMSEAICGRPGKVNDQEISVRDKRAAYEERISSSKDLYSEIENARTTLSNLRNSRFTMLSQNAESHSMKLLKSSIDSNGTDEQSFTQSKKLDASHTGQESQIIKDNGRDTDRLDNVKSVSSSLDAINNIGSIRTSNVIANNGSLRTSKILEKFKNASVQEQKSLRKDVSKVQDLERRVQALEGELTEAAAIEVGLYSIVPEHGSSINKVHSPARRLSRLYLHACKENSLRRASSAKSIVSGLILVVKACGSDVPRLTFWLSNSVVLRAILYKSLNGSEGEDPHMVISALEKVESWIFSRIIESIWWQTFAPYMHSAAAKGIARVVESESNKHRQTPDSLDHEQMNTSLELWKTAFMDACERICPVRSTGHSCGCLSVLSMLIMEQCVGRLDVAMFNAILREPEDEVPTDPLSDPISDSRVLPIPSGKASFGAGAQLKKTIGNWSSWLTDLFGSPITFHLLTSLSELMMLPKDMLLSNTIRKEVCPTIGIPLIKRIVDSFVPDEFCPDPIPEVVLEILYSEDLIESSEDCVRSLPCAATPTVYHPPSASLIGCILGDDGSQARLSRSGSLTLRKSNTSDDELDELDLPLTSIIDSPRTVTSSTKHMWTLKDIDSCNTVRYRLLRQVWLNCD 872
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02654 872 Coils Coil 276 296 - -
Ecan8g02654 872 MobiDBLite consensus disorder prediction 317 343 - -
Ecan8g02654 872 MobiDBLite consensus disorder prediction 317 356 - -
Ecan8g02654 872 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 12 868 IPR021827 GO:0005643(InterPro)
Ecan8g02654 872 Coils Coil 406 433 - -
Ecan8g02654 872 ProSiteProfiles C2 NT-type domain profile. 7 167 IPR019448 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02654 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
83771 Ecan2g00687 Ecan8g02654
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:7998840 Ecan8g02654 Ecan-Chr8:37505656 dispersed
Ecan Ecan-Chr8:37505656 Ecan8g03521 Ecan-Chr8:44030631 dispersed
Ecan Ecan-Chr8:37505616 Ecan8g02654 Ecan-Chr8:37505656 tandem
Ecan Ecan-Chr8:37505656 Ecan8g02655 Ecan-Chr8:37505718 tandem