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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02661 ATGGAAATGCAAAGCGACTTTGATCGTCTTCTTTACTTCGAACACGCTCGCCGTAACGCTGAAACCACCTACGCCAAAAATCCTCTTGATGCCGAGAATTTAACTAGATGGGGAGGTGCGTTACTTGAGCTATCCACTTTCCAGAATGTTCAGGATTCTAAAGTTATGATTAAAGATGCTATATCGAAACTGGATGAAGCGTTAGCGATTGATCCGAAGAAACATGAAGCATTATGGTGTATAGGGAATGCAAAAACATCTTATGCTTTTTTGACTCCTGATAAAGATGAAGCTAAGCCTTACTTTGATTCCGCTTATACTTACTTTCAGCAAGCTGTTAATGAGGAACCAGGGAACGAACTTTACCGCAAGTCATATGAAGTGGCTCCAAAGGCTCCTGAATTACACTCAGAGCTCCATAAACAGGGGTTTAGTCCAGAAGTTATGGGGCCAGCGCCAGGTATCATAACAGGTCCTTCAACTTCGTCTAGTGTCAAGGGTCCCAAGACGCAAAAGAGCAGCGATCTGAAGTATGATATCATGGGATGGGTTATTCTTGCTGCTACTATTGTGGTTTGGGTTGGATTTGCTAAAGCAAATATACCTTCACCACCTCCCCAATAA 624 42.79 MEMQSDFDRLLYFEHARRNAETTYAKNPLDAENLTRWGGALLELSTFQNVQDSKVMIKDAISKLDEALAIDPKKHEALWCIGNAKTSYAFLTPDKDEAKPYFDSAYTYFQQAVNEEPGNELYRKSYEVAPKAPELHSELHKQGFSPEVMGPAPGIITGPSTSSSVKGPKTQKSSDLKYDIMGWVILAATIVVWVGFAKANIPSPPPQ 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02661 207 Pfam Plant specific mitochondrial import receptor subunit TOM20 7 198 - -
Ecan8g02661 207 SUPERFAMILY TPR-like 13 126 IPR011990 GO:0005515(InterPro)
Ecan8g02661 207 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 1 206 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Ecan8g02661 207 MobiDBLite consensus disorder prediction 150 171 - -
Ecan8g02661 207 Gene3D Tetratricopeptide repeat domain 1 148 IPR011990 GO:0005515(InterPro)
Ecan8g02661 207 MobiDBLite consensus disorder prediction 156 171 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02661 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
85310 Ecan4g00063 Ecan8g02661
86023 Ecan6g02397 Ecan8g02661
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr4:753434 Ecan8g02661 Ecan-Chr8:37554428 dispersed
Ecan Ecan-Chr6:34397096 Ecan8g02661 Ecan-Chr8:37554428 dispersed
Ecan Ecan-Chr6:34397094 Ecan8g02661 Ecan-Chr8:37554428 wgd
Ecan Ecan-Chr8:37554428 Ecan8g03516 Ecan-Chr8:43993925 wgd