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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02667 ATGGATCCAGACGCGTTATCAAAAGCATTTGTGGATCATTACTATTCAACATTCGATACAAACAGAGGTGGATTGGCTAATTTGTATCAGGATGCATCCATGTTGACTTTCGAAGGTCAAAAGATCCAAGGCTCACAAAACATCGTTGCTAAACTCACCTCCTTACCTTTCCAGCAGTGTAAACATACCATCACCACCGTTGATTGTCAGCCTTCTGGACCTGCTGGTGGTATGCTTGTGTTTGTTAGCGGCAATCTTCAACTCGCCGGTGAACAACACGCTCTTAAGTTCAGTCAGCTGTTCCATTTGATGCCAACACCACAAGGAAGCTTTTATGTGTACAATGATGTATTCCGCTTGAATTATGCTTAA 372 42.74 MDPDALSKAFVDHYYSTFDTNRGGLANLYQDASMLTFEGQKIQGSQNIVAKLTSLPFQQCKHTITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQLFHLMPTPQGSFYVYNDVFRLNYA 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02667 123 PANTHER NUCLEAR TRANSPORT FACTOR 2 2 122 IPR045875 GO:0006913(PANTHER)|GO:0006913(InterPro)|GO:0044613(PANTHER)
Ecan8g02667 123 FunFam Nuclear transport factor 2 1 123 - -
Ecan8g02667 123 Pfam Nuclear transport factor 2 (NTF2) domain 7 120 IPR002075 -
Ecan8g02667 123 CDD NTF2 2 122 IPR018222 -
Ecan8g02667 123 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 120 IPR018222 -
Ecan8g02667 123 Gene3D - 1 123 - -
Ecan8g02667 123 SUPERFAMILY NTF2-like 4 121 IPR032710 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02667 K14285 NTF2-related export protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:8199554 Ecan8g02667 Ecan-Chr8:37589579 dispersed
Ecan Ecan-Chr6:34435279 Ecan8g02667 Ecan-Chr8:37589579 dispersed
Ecan Ecan-Chr8:37589579 Ecan8g03507 Ecan-Chr8:43918678 dispersed
Ecan Ecan-Chr8:37589566 Ecan8g02667 Ecan-Chr8:37589579 tandem