AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02692 ATGGCTGCTGTCAAGGCTGCTATACTTGTCTCCGACATGCCACATTTTGACCAAGTCAACGACACCTCCGCTGCCTCGTTGTCTCTTTACGCCACCCGTCTTCCTACTGGATTGGATATGAGCAATAGTAACAATGGGCGGAAAGTGATGCCGAAATTCATGGTGGTGGGTCACCGTGGTCATGGTATGAATGTGTTACAGTCAACTGATAAGAGAATGAAAGCTTACAAAGAGAATTCAATTCTTTCCTTCAATAACGCTGCTAATCACCCACTTGATTACATTGAATTTGATGTTCAGGTGACAAAAGACGACACCCCGGTCATTTTCCATGACGATTTCCTCCTCTCTGAAGACAATGGTACCGTAATTGAAAAGAGGATTACTGAGTTGACTTTGAATGAATTCTTTAGCTATGGTCCTCAGAGAGAAACAGGCCTCATTGGCAAATCTTTGCTGAGAAAATCCAATGGAAATATCGTCGGTTGGGACGTTGAAATTGACGATCATTTTTGTACTCTAGAAGAAGCATTCCAAAAAGTTAACCCTATTTTGGGATTCAACATTGAGTTGAAATTCGACGATCACGTTGTTTATGAACAAGAGTATCTCATTCATGTTCTTCAAGTCATTTTGAAGGTGGTATATGGAAACGCCCAAGAAAGACCCATAATCTTTTCAACTTTCCAGCCTGATGTGGCCTTGCTAATGAAAAAACTTCAGAATACATACCCGGTGTACTTCTTGACGAACGGAGGAAATGAGATATTCAATGATGTGAGAATGAACTCATTAGAAGAAGCTAAAAAGCTGGCATTGGAAGGTGGATTGGATGGCATTGTTTCAGAAGTAAAGGGTGTTTTTAGAAACCCTTCTGTAGTAAGAGAGATTAACGAGTCTAATCTCTCCCTACTTACTTATGGCAAATTAAATAATGTCCCTGAAGCCGTACATGTTCAATATCTTATGGGCATCGAGGGTGTGATTGTTGATTTAGTACAAGAAATCACCAGTGCAGTTAAGGCGTATAGTGATAGCAACAAGAAGACCATCATAGAAGGAGAGGAAGGAGGATTACAAGTGAAGGAGAAAACCAATAAGATTGAATTGCCGTTTCTGCTGAGCTTGATCTCCCAAGTTATTCAGCACTGA 1152 40.71 MAAVKAAILVSDMPHFDQVNDTSAASLSLYATRLPTGLDMSNSNNGRKVMPKFMVVGHRGHGMNVLQSTDKRMKAYKENSILSFNNAANHPLDYIEFDVQVTKDDTPVIFHDDFLLSEDNGTVIEKRITELTLNEFFSYGPQRETGLIGKSLLRKSNGNIVGWDVEIDDHFCTLEEAFQKVNPILGFNIELKFDDHVVYEQEYLIHVLQVILKVVYGNAQERPIIFSTFQPDVALLMKKLQNTYPVYFLTNGGNEIFNDVRMNSLEEAKKLALEGGLDGIVSEVKGVFRNPSVVREINESNLSLLTYGKLNNVPEAVHVQYLMGIEGVIVDLVQEITSAVKAYSDSNKKTIIEGEEGGLQVKEKTNKIELPFLLSLISQVIQH 383
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02692 383 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 31 347 IPR051578 GO:0046475(PANTHER)
Ecan8g02692 383 Pfam Glycerophosphoryl diester phosphodiesterase family 58 333 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Ecan8g02692 383 SUPERFAMILY PLC-like phosphodiesterases 51 334 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ecan8g02692 383 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 341 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ecan8g02692 383 FunFam Glycerophosphodiester phosphodiesterase GDPD2 44 342 - -
Ecan8g02692 383 ProSiteProfiles GP-PDE domain profile. 53 340 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02692 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
86028 Ecan6g02420 Ecan8g02692
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr6:34544816 Ecan8g02692 Ecan-Chr8:37836007 wgd
Ecan Ecan-Chr8:37836007 Ecan8g03490 Ecan-Chr8:43805374 wgd