AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02693 ATGTTAGGAAAGCTAGGGCGAAAATTATCGATGCAGAAAAGTGATGTGAAAGATCATCACCAGTATCATCATCAGCCTTCTCCTTATATTGATGAGCTTGCTTTAGCTTCTAAGGATATGCAAGATATGAGAAACTGTTATGATGGGTTATTATCTGCGGCTGCAGCAACGGCAAATAGTATATATGAATTTTCGGAGTCACTAAATGAAATGGGCAACTGCTTGATGGAAAAAAACGTTGCAGATTCTGATCCTGAATGTGGAAAAGTGCTATCAACTTTAGGAAATATGCAATTGGAACTTCAGAAAATTGCTGATAGTTATCGTTCATATGTAATTGTGACGATTACCAATCCATCAGAGTCTCTTCTCAGTGAGCTACGGAAAGTGGAGGAGATGAAACTTCAATGCGATGAAAAAAGAGAGGTGTATGAATACATGATGGCACAACACAGAGAGAAAGGAAAATTGAGAAATGGAAAAGTTGAAAGTTCAATTGCTCAAAAACTACAAGAAGCTCAAGAGGAATATGATGAAGTGACTAGATTATGTGTATTTCGTGTGAAATCGCTTAAGGAGGGACAATGTCGCAGTCTTTTAACACAAGCTGCTCGTCACCACGTTGCTCAGGTGAATTTCTTTCGCAAAGGACTTAAAGCTCTTGAAGCAGTTGAACCTTTCATAAGAAATGTCGCGGAAAAGAATCATATCGATTACCAACTCAGTGAACTACCTGATCGAGAGTCCCGTGGAGATGAACCTATGAGTGGCTATGAAAGTACCGATGATGGAGAATTGAGTTTTGATTACAAACAAAAGAAACAAGGACTCGATGATGATGGGAGCTCACCAAATCCAATGGAGTTGGACCAGGTAGATGTTCTATATCGTCAAGCTTCAAATTTAGAAGATTTGGAGATAAATATGAATAAACCCAAAGGGGAACAGCTTATTGGTAGACAAGCCAGAGTGAGCAGTTATTCTGCCCCACTATTTCCTGAAAAGCTTGGTACATCCGAGAGGCCAAAAGAAACCCAACCCCCACGAAAATTTTACTCCTATGTATTACCTCCCCCCATTGTGGATACCCGAAATCCAGTTTCAAGACCCTCTACATCCATTCCGCATTCCATTTCATCTCAAAATCTACAGCCACCATTGCCACCTGACCATGAGAAGCATTTAAGACGTACCGGTGATGATAACACATCAACATCTGCTTTGAGCTCAAAGGTCCAGTCATCAATAAAAGATGGTAGCGGTATTAATTCGTCCATACAGTTACCTGCTCCCACTGGAAGATTTTCCTTCTCACAGCGGGATAGTTATAGCAGAAATGATAGTAAAGCAGCCAAACGACAATCTTTTTCTGGCCCATTACCACCAAGCAAGCAATTTTCTTTTAAAATGGTATCTAATAATAGCGGGCCCATTACCCCTACTGAACTTCCTCAGCCGCCTTCTCGGGGACCAGTTTCCCAGCCAAATTTGTCAGCGAGTGTGCCCCGCAGTGTTTCTCCACCTCTTATATCTTCACCTAAAATAAGTGAGCTTCACGAGCTTCCTAGGCCCCCTGGTAGTTTACCCTTCTCGAAACCTGTTACTATTTCTAGTGGTTTGATTGGACATTCAGCACCTTTATTATCAAAAAATCAAGAGATCTCTCCACCGAATAAACGTCCTATGTCAACATCAACCTGTCCATCTCCTCTTCCACTTCCACCTTCAGTTGCTACAAAAAGCTTTTCCATACCCTCTGGTAACAATGAGACATGA 1776 41.27 MLGKLGRKLSMQKSDVKDHHQYHHQPSPYIDELALASKDMQDMRNCYDGLLSAAAATANSIYEFSESLNEMGNCLMEKNVADSDPECGKVLSTLGNMQLELQKIADSYRSYVIVTITNPSESLLSELRKVEEMKLQCDEKREVYEYMMAQHREKGKLRNGKVESSIAQKLQEAQEEYDEVTRLCVFRVKSLKEGQCRSLLTQAARHHVAQVNFFRKGLKALEAVEPFIRNVAEKNHIDYQLSELPDRESRGDEPMSGYESTDDGELSFDYKQKKQGLDDDGSSPNPMELDQVDVLYRQASNLEDLEINMNKPKGEQLIGRQARVSSYSAPLFPEKLGTSERPKETQPPRKFYSYVLPPPIVDTRNPVSRPSTSIPHSISSQNLQPPLPPDHEKHLRRTGDDNTSTSALSSKVQSSIKDGSGINSSIQLPAPTGRFSFSQRDSYSRNDSKAAKRQSFSGPLPPSKQFSFKMVSNNSGPITPTELPQPPSRGPVSQPNLSASVPRSVSPPLISSPKISELHELPRPPGSLPFSKPVTISSGLIGHSAPLLSKNQEISPPNKRPMSTSTCPSPLPLPPSVATKSFSIPSGNNET 591
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02693 591 Pfam BAR domain of APPL family 32 234 IPR004148 GO:0005515(InterPro)|GO:0005737(InterPro)
Ecan8g02693 591 Gene3D Arfaptin homology (AH) domain-BAR domain 17 249 IPR027267 -
Ecan8g02693 591 Coils Coil 163 183 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 401 479 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 365 386 - -
Ecan8g02693 591 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 2 589 IPR037488 -
Ecan8g02693 591 CDD BAR 39 226 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 10 24 - -
Ecan8g02693 591 SUPERFAMILY BAR-IMD domain-like 32 229 IPR027267 -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 1 24 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 492 511 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 240 265 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 332 591 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 531 566 - -
Ecan8g02693 591 MobiDBLite consensus disorder prediction 240 257 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02693 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
83788 Ecan2g00725 Ecan8g02693
86029 Ecan6g02421 Ecan8g02693
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr2:8439278 Ecan8g02693 Ecan-Chr8:37841378 wgd
Ecan Ecan-Chr6:34555449 Ecan8g02693 Ecan-Chr8:37841378 wgd
Ecan Ecan-Chr8:37841378 Ecan8g03487 Ecan-Chr8:43763882 wgd