AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02694 ATGGGGTGTGCAATTTCCGTGTATAGAGTTGGAGGCAATAATAATAATAATAAAAAGCCGATGAAGATCCCTTTAGTAACCATACTAGTTCCTTCTTCTATTCGTGTTCCTACGAATACTAATATTTCAAAATCACTTAAAGGCCTTGTTCCTAAAGATCTCGTTGATCGTCTAACATCTTTTAGAAGTCAAATCGGTCTTCTAGCCCAACAAACTGATATTGCAGATGTATCAGCTGTCCCTGAATTGCTTCGTGCATTGGAGGAATATCTGCCTTTGTTCGTTGGCCTCACTGATCAAGAGCTTGGCTTTAGAGAACTCATTGAATTCAAATGGAAAAGTATAGACGATGGACGACAAGAAGTATGTGTTGCGGATTCATGGTTTGAATTACTATCTGTTGTTCATATGATGGCTATGTTGACCTTAATGGAGGCAAATTCAAAGTTGATTCCTGATCAAACTGTTTCCACTGAAACAGTCGAATCTACAGATAACATAAGGTGTGCAGTGGACTTATTGGTAAAAGCAGCCGGGTACTTGCAATTCTGTCTTCGGGAAATTCTTGTCCAAATTCCACCTCATATAAGGATGAAGCTACCTGTAGATTTGCAGGAGAATGTGATAGAGGCTGCTTATATTCAAGCACTCGGGCAGGGAACGGAAATGCAGCTTGCTTCAGCAGTTGAAAGTAAAAATGCCACTTTATCCGTTAAGAGAAGACTAGCATGTGAGCAATTAAGTTATTTCGGACAGGCTCATTACTGCTTGTCAACGTGTGAGAACCTTAATGGATATGGAAAGAAACATTTGTCATTCATCAAATGGAAGTACCTTGAAGCAAAGGCTGCAGCATATTATTACCATGGTCTGATCACAGACAAGGGTACCGAACCATCCTGCCATATCAGTGCAGTTTGTTGTTTTCTAGCAGCTGAAGAGATTCTAACAGAGAGCAAGAAGGCCTGCTTAAACTTTTGCCTAGCACTTCCCATAACAAGGGCTCCGGCTGCATGGGGTGCCATGAAGCATTTAAATAAGAAAATTCCAGAAACTGCAGCTAAAAAGTCTCAGATGTATGCTTACCTTTTAGAGGAAGAAAAGAGTTTGGATGTGTTACCGGACCTGCCTGAGTTTGAGTTGTCATTAAAAGCAGACGAGTATAAATTGCCAGATAAAGATGCATCATGGGAGAATGACAAATGGATAATACCTAATCAGACACTTAAAACTCACTTAACAGACGATGAAGAAGATGACAACTGA 1266 40.13 MGCAISVYRVGGNNNNNKKPMKIPLVTILVPSSIRVPTNTNISKSLKGLVPKDLVDRLTSFRSQIGLLAQQTDIADVSAVPELLRALEEYLPLFVGLTDQELGFRELIEFKWKSIDDGRQEVCVADSWFELLSVVHMMAMLTLMEANSKLIPDQTVSTETVESTDNIRCAVDLLVKAAGYLQFCLREILVQIPPHIRMKLPVDLQENVIEAAYIQALGQGTEMQLASAVESKNATLSVKRRLACEQLSYFGQAHYCLSTCENLNGYGKKHLSFIKWKYLEAKAAAYYYHGLITDKGTEPSCHISAVCCFLAAEEILTESKKACLNFCLALPITRAPAAWGAMKHLNKKIPETAAKKSQMYAYLLEEEKSLDVLPDLPEFELSLKADEYKLPDKDASWENDKWIIPNQTLKTHLTDDEEDDN 421
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02694 421 ProSiteProfiles BRO1 domain profile. 32 421 IPR004328 -
Ecan8g02694 421 SMART BRO1-2 24 407 IPR004328 -
Ecan8g02694 421 PANTHER UNCHARACTERIZED 17 410 IPR038898 -
Ecan8g02694 421 Gene3D alix-aip1 like domains 42 404 IPR038499 -
Ecan8g02694 421 CDD BRO1-Alix-like 30 384 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02694 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr6:6426458 Ecan8g02694 Ecan-Chr8:37849980 dispersed