AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ecan8g02721 ATGGAGTTACAAAGCCAGGTAGCACAGGCGGTACACGTGCTGAATCACGATACACAATCATGTAATCGTGTATCAGCAAATCAATGGCTGGTTCAGTTTCAGCAAACAGATGCTGCTTGGGAAATTGCTACTTCTATTTTGACTTGTCATCAGTCTTCCGGTTTCGAAGTCGAGTTTTTCGCTGCTCAGCTTCTTAAACGAAAGATCCAAAATGAAGGACATTGTCTGCAGCTAGAAGCTAAGGAATCACTCGTTAATGCTCTTCTTCTGGCTGCTAAAAGATTTAGTTTAGGCCCGTCCCAGCTTTTAACACAAATTTGTCTGGCTTTATCTACACTGATACTTCATGCTGTGGAGTACTACAAGCCAATTGAGAAGCTCTTTTACAGTCTTCAGAATATTCAAGGTCAGGATGATGGCAATATGGTTGTTTTGGAAATGCTCACAGTATTACCAGAAGTTGTTGAAGATGAATCTGCTAATTATAGAACCAAATCAGGTCAAAGAGTTGACTATGGTCCAGAGTTACTCTCGCATACATCAGCAGTGCTTGAATTCTTAAAGCAGCAATCCGAGGAAAGGTTTGATGATGTCGTCCAACTACATGAAAGGAGCAGAAAGATACTGCGTTGTTTGTTAAGTTGGGTCCGAGCAGGATGCTTCTCAGAAATTTTACCAATATCATTATTAGCCCATCCCCTTCTTAATTTTGTTTTCAGTTCTTTGCAGGTTCCATCCTCATTTGATTTAGCTACTGAGGTTTTGATTGAGCTCGTTGGTCGGCATGAGGGATTGCCACAAGTTCTTATATGCAAAGTAGGATTTATTAAAGATGTTCTTCGTCAAGCATTTAATGGCAGAGATGAGAAAGTAATCAGTGGTCTTGCTTGCTTGATGTCGGAGATTGGTCAGGCTGCCCCGAGTTTGATCATAGAAGCCCACTCTGAAGCACTAACACTGGTGGATGCACTTTTGAGTTGTGTATCATTTCCAAGTCAAGATTGGGATATTGCAGACTCAACCTTACAGTTCTGGTGTTGTCTTGCAAGTAACATTGTTCGAATGGATTTCGATAATAGTGAACATGTTAAAGATGTTTTTTCCCCAGTGTTTTCGGCATTGCTTGATGCTCTTTTAATGCGTTCTCAGGTGGATGATGCAACATATACAACTGAGACTGTAACAAGAGACTTACCAGACGGGTTGGCTCAATTTAGATTAAATCTAGTGGAGCTGTTGGTGGATATTTGCCACCTTTTAAGGTCTTCTGCATATCTGCAGAAGATTTTTTCTAATGGTTGGATATCTTCAAACTCAAGCATGCAAATTCCTTGGAAGGAGGTGGAAACCAGAATGTTTGCTCTTAATGCGGTTGCTGATGTAGTACTGCATGAGGGCCAAACATTTGATCTCTTCATGGTGTTGCACCTGGTGACAGTTTTATGTGATAGGGAATCGTATGAACCAAAAGGCTTTATGTGTATTGTACATCGATCACTTGCAGATGTTATTGGTTCTTATTCGAAGTGGATTTCTTCATATATAACTGATGTCAGACCATTGCTTTTATTTTTTTCGGCTGGTTTGTCAGAACCATTGTGTACACATGCGTGTGCAACTGCCTTCAGAAAGTTCTGTGAAGATGCTACTGCAGTCATGCACAAACCTGCAAGTTTAGAAATGTTAATGTGGATTACAGAGGGATTGGAGAAGAGGCACCTACCTCTAGAAGATGAGGAAGATGTTATTGGTGCTGTTACTCTGATACTTGGATCCCTTCCTAACTTGGAGTTAAGAAACAGTTTGTTGCTTAAGTTGCTTTCTTCTAGCTTTGGATCCATTCGCAAACTTATTGACAGGGATCATGTTCATTCTTTGAGGCAACTACCAGCTGCTTACACTCATCTTGTCAGTTCTTCAGTGAGGGGCTTTTTCAGGATAGAAACTGTTTTCAGTCATCTTGTAGTTACACCTTCTACATGTCATGATATAGACAATTCTGTAATTGTCATTCTTGAAAGTTTTTGGCCTCTCCTTGAGAAAATTTTGCAGTCAGAGCATATTGAGAATGCAGGTTTATCCATGGCAGCTTGCAGGGCACTCTCACAGGCAATCAAGTCTGCAGGTCATCACTTTGTGACATTGTTGCCCAAAGTTTTAGATTATCTATCAACAAATTTTGCGTCATTTCAAACTCATGAGTGCTACATTAAAACAGCTTCCGTTGTTGTAGAAGAATTTGGTAACAAGGGGGAATATGGACCTTTATTCATCAGTACATTTGAAAGATTTACAAATGCATCATCAGTAATGGCTCTAAATTCTTCTTATGTATGTGATCAAGAGCCCGATCTTGTGGAGGCTTATTGTAGTTTCACATCAATCTTTCTTCACAGCTCTTCAAAGGAAGTAGTGGCTTCTTCTGGCCCTCTTTTAGAAGTTTCACTTCAGAAAGCCGCTATATGTTGTACAGCTATGCATCGTGGAGCAGCACTCGCAGCAATGTCGTATATGTCGTGTTTCCTAGAGCTTTGCGTGACTTCATTGCTGGAATCAATGACATGTAACTCTGAATCCCCAGTTACATCCATGACTGTTCATGTAATATCTCACAGTGGCGAGGGACTTGTCTCAAATGTGGTTTATGCTTTACTTGGTGTTTCAGCAATGTCAAGGGTTCATAAATGTGCACTTTCTTTGACTTATTTTGTTTATAGATCTACTTAG 2727 40.26 MELQSQVAQAVHVLNHDTQSCNRVSANQWLVQFQQTDAAWEIATSILTCHQSSGFEVEFFAAQLLKRKIQNEGHCLQLEAKESLVNALLLAAKRFSLGPSQLLTQICLALSTLILHAVEYYKPIEKLFYSLQNIQGQDDGNMVVLEMLTVLPEVVEDESANYRTKSGQRVDYGPELLSHTSAVLEFLKQQSEERFDDVVQLHERSRKILRCLLSWVRAGCFSEILPISLLAHPLLNFVFSSLQVPSSFDLATEVLIELVGRHEGLPQVLICKVGFIKDVLRQAFNGRDEKVISGLACLMSEIGQAAPSLIIEAHSEALTLVDALLSCVSFPSQDWDIADSTLQFWCCLASNIVRMDFDNSEHVKDVFSPVFSALLDALLMRSQVDDATYTTETVTRDLPDGLAQFRLNLVELLVDICHLLRSSAYLQKIFSNGWISSNSSMQIPWKEVETRMFALNAVADVVLHEGQTFDLFMVLHLVTVLCDRESYEPKGFMCIVHRSLADVIGSYSKWISSYITDVRPLLLFFSAGLSEPLCTHACATAFRKFCEDATAVMHKPASLEMLMWITEGLEKRHLPLEDEEDVIGAVTLILGSLPNLELRNSLLLKLLSSSFGSIRKLIDRDHVHSLRQLPAAYTHLVSSSVRGFFRIETVFSHLVVTPSTCHDIDNSVIVILESFWPLLEKILQSEHIENAGLSMAACRALSQAIKSAGHHFVTLLPKVLDYLSTNFASFQTHECYIKTASVVVEEFGNKGEYGPLFISTFERFTNASSVMALNSSYVCDQEPDLVEAYCSFTSIFLHSSSKEVVASSGPLLEVSLQKAAICCTAMHRGAALAAMSYMSCFLELCVTSLLESMTCNSESPVTSMTVHVISHSGEGLVSNVVYALLGVSAMSRVHKCALSLTYFVYRST 908
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ecan8g02721 908 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 5 898 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Ecan8g02721 908 SUPERFAMILY ARM repeat 1 843 IPR016024 -
Ecan8g02721 908 Gene3D - 2 905 IPR011989 -
Ecan8g02721 908 Pfam Importin-beta N-terminal domain 26 89 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
Ecan8g02721 908 Pfam Exportin 1-like protein 100 255 IPR013598 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ecan8g02721 K15436 transportin-3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ecan Ecan-Chr8:38049162 Ecan8g02722 Ecan-Chr8:38049169 tandem