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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr1g05962 ATGGATGAATCTCGTAACCCATTTCTTCAAGCTAATATTATTGAGTCTGCCAATAGTTATAGTTCAAGATTCAACCCTGATAAGCGTGGCCGCCAGAACTTCATTGGACCCGGTTTTCCAGGGTTGAAGAAACGAGGTCATGCTCTTGGGAACCGTTCTTGGATAAAAATTGAGCAAAATGGAAGCTCAAAAGTGGTAGAGTTAGACAAGGCTACGGTAATGAGGCATTGCTCTTTACCTGCCAGAGATCTTCGTCTTTTGGATCCTCTTTTTATTTATCCGTCCACAATATTAGGCCGCGAGAAGGCAATTGTGGTTAGTCTTGAGCAGATTAGATGTATAATCACAGCCGATGAGGTGTTTCTTATGAATTCATTGGACGGATCTGTAGTTCAGTACAAATCCGAATTGTGCAAGCGCCTTCAGCAAGAAAAATATCACTCTGATGACCTGCCATTCGAGTTTAGGGCATTGGAACTAGCTTTGGAGTTTACATGTCTTACTCTCGATACTCAGGTGAAAGAGTTGGAAATGGAAATTCATCCTGTGCTTGATGAACTCGCAAAATCAATAAGTACTCTCAATCTTGAGCGTGTTCGTAGATTCAAAGGCCACCTTTTAGCATTGACTCAAAGGGTGCAAAAGGTCTGTGATGAAATAGAACAGCTAATGAATGATGATGGTGATATGGCTGAGATGTATTTAACTGAGAAGAAACAAAGGAATTCATGTAATGATCTATATGATCAAGTTCAAGGAAGTAATCTTATCGGGCCTGGAGTGGGAATAGGATCAAAATCTGCTCCTGTATCTCCTGTGGGGTCCTCGAGTGGTACACAGAACTTGCAAAGGGCGTTTAGTAATGCAAGTGCACATAAGCATGGAAGTTTGTTGAGTTCATCGGTAACTGGCGAAACTGAAAACATTGATCAACTTGAGATGTTGCTGGAAGCGTATTTTGTTGGTATTGACAACACTCTAAACAAGTTGCTTTCGCTCAAGGAATATATTGATGACACTGAAGATCTGATCAACATTAAACTTGGAAATGTTCAGAATAAGCTGATTAAGTTTGAGCTGCTCTTGACTGCTGCCACTTTTTTGGCTACTGTATTTGCTGTTGTGACAGCAGTATTTGGAATGAACTTTGAAGACGATGTTTTTGACGAGCCAAACAGATTCAATTGGGTCGTTTCTATTAGTGCAACATTATGTGGAGTCTTGTATATCTGTTTCTTGATTTATTTCAAACATAAGAAAGTTTTCCCTCTGTAG 1275 40.08 MDESRNPFLQANIIESANSYSSRFNPDKRGRQNFIGPGFPGLKKRGHALGNRSWIKIEQNGSSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQQEKYHSDDLPFEFRALELALEFTCLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEQLMNDDGDMAEMYLTEKKQRNSCNDLYDQVQGSNLIGPGVGIGSKSAPVSPVGSSSGTQNLQRAFSNASAHKHGSLLSSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDDVFDEPNRFNWVVSISATLCGVLYICFLIYFKHKKVFPL 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr1g05962 424 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 38 421 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Enbr1g05962 424 Pfam Magnesium transporter MRS2-like 62 242 - -
Enbr1g05962 424 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 361 413 IPR045863 -
Enbr1g05962 424 CDD Mrs2-Mfm1p-like 54 421 IPR039204 -
Enbr1g05962 424 Gene3D - 45 125 - -
Enbr1g05962 424 FunFam Magnesium transporter MRS2-1 41 125 - -
Enbr1g05962 424 Gene3D Magnesium transport protein CorA, transmembrane region 362 420 - -
Enbr1g05962 424 Coils Coil 206 226 - -
Enbr1g05962 424 Gene3D Magnesium transport protein CorA, transmembrane region 128 355 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr1g05962 K16075 magnesium transporter
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Event-related genes

Select Gene_1 Gene_2 Event_name
86624 Enbr1g05962 Enbr4g02813
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr1:181869594 Enbr1g08945 Enbr-Chr1:277273141 dispersed
Enbr Enbr-Chr1:181869594 Enbr4g02812 Enbr-Chr4:97416608 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Enbr3g01226 ACH 123 414 MRS2 gene family AT5G22830 80.822 3.74e-157 459.0
Enbr7g01556 . 1 416 MRS2 gene family AT1G16010 81.754 0.0 667.0
Enbr1g00768 ACH 123 459 MRS2 gene family AT5G22830 77.515 3.15e-175 503.0
Enbr6g00179 . 1 436 MRS2 gene family AT3G58970 66.444 0.0 550.0
Enbr2g04838 . 10 386 MRS2 gene family AT5G09690 74.142 0.0 553.0
Enbr2g03009 . 1 439 MRS2 gene family AT1G80900 77.602 0.0 662.0
Enbr2g04841 . 10 328 MRS2 gene family AT5G09690 73.313 7.66e-156 441.0
Enbr2g04846 . 10 386 MRS2 gene family AT5G09690 74.142 0.0 553.0
Enbr1g08945 . 1 442 MRS2 gene family AT1G16010 79.642 0.0 690.0
Enbr6g02846 . 145 484 MRS2 gene family AT3G19640 63.506 8.19e-140 404.0
Enbr8g00052 . 47 483 MRS2 gene family AT3G19640 59.513 4.93e-172 491.0
Enbr1g05962 ACH 1 421 MRS2 gene family AT2G03620 65.116 5.65e-178 501.0
Enbr7g02600 . 1 386 MRS2 gene family AT5G09690 62.341 3.64e-162 457.0
Enbr4g02813 ACH 47 474 MRS2 gene family AT3G19640 65.596 0.0 544.0
Enbr4g02812 ACH 47 484 MRS2 gene family AT3G19640 68.49 0.0 584.0
Enbr1g00208 ACH 1 442 MRS2 gene family AT1G16010 79.642 0.0 692.0
Enbr7g00821 . 47 483 MRS2 gene family AT3G19640 59.513 4.93e-172 491.0
Enbr3g04445 . 240 438 MRS2 gene family AT1G16010 74.752 2.46e-92 288.0