AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr1g09122 ATGTTGAGGGCCGGAAGCCGGAGACTAGCAACTTCTCTTACATCCCCGGCGTGGATCCATAAAAGCTCTTCTTCAGCTGTCTCCAAATTCACAAATCAGATCGATGACTCTCCCTACGCCGCCACCGCCAATCACGATTTCCGATCTATCCACGTCTCTTCTCTTTTCAACCCTAATTTCCATCATTTCTCCCGAGGATTTGCTTCACACTCGATAACCCCAAATTATGAGGACAAAATTCCACCAACACTAGCGGCCATCGCTAACCCAACTTCAAAGATAGTATATGATGAGCATAACCATGAGCGTTACCCACCTGGTGACCCAAGCAAACGGGCATTTGCATATTTTGTCTTGACAGGCGGAAGGTTTGTGTACGCTTCTTTGATTCGTCTTTTGGTTCTCAAATTTGTTCTCAGCATGTCTGCCAGTAAAGATGTTCTTGCACTCGCTTCTCTCGAGGTTGATCTTTCTAGCATTGAACCTGGGACCACCGTGACAGTTAAGTGGCGTGGAAAGCCTGTGTTTATCAGACGCCGAACAGAGGATGATATAAAGCTAGCAAACAGTGTTGATGTCGCAACTCTTCGTGACCCACAAGAGGATGCTGCTAGGGTCAAGAACCCTGAATGGCTAGTTGTGGTTGGTGTGTGTACCCATCTGGGTTGCATCCCGCTACCAAATGCTGGTGATTTCGGTGGCTGGTTTTGCCCGTGCCATGGTTCTCATTATGACATATCTGGCAGGATCCGTAAGGGGCCAGCACCCTATAATTTGGAGGTGCCCACTTACAGTTTCTTGGATGAGAACAAGTTGCTTGTTGGATAA 828 47.58 MLRAGSRRLATSLTSPAWIHKSSSSAVSKFTNQIDDSPYAATANHDFRSIHVSSLFNPNFHHFSRGFASHSITPNYEDKIPPTLAAIANPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVATLRDPQEDAARVKNPEWLVVVGVCTHLGCIPLPNAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLDENKLLVG 275
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr1g09122 275 Gene3D - 144 275 IPR036922 GO:0051537(InterPro)
Enbr1g09122 275 NCBIfam ubiquinol-cytochrome c reductase iron-sulfur subunit 131 275 IPR006317 GO:0008121(InterPro)
Enbr1g09122 275 PRINTS Rieske 2Fe-2S subunit signature 235 247 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Enbr1g09122 275 PRINTS Rieske 2Fe-2S subunit signature 247 259 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Enbr1g09122 275 PRINTS Rieske 2Fe-2S subunit signature 213 224 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Enbr1g09122 275 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 185 273 IPR017941 GO:0051537(InterPro)
Enbr1g09122 275 FunFam Cytochrome b-c1 complex subunit Rieske, mitochondrial 145 275 - -
Enbr1g09122 275 Pfam Rieske [2Fe-2S] domain 205 260 IPR017941 GO:0051537(InterPro)
Enbr1g09122 275 CDD Rieske-cytochrome-bc1 152 275 - -
Enbr1g09122 275 SUPERFAMILY ISP domain 149 271 IPR036922 GO:0051537(InterPro)
Enbr1g09122 275 SUPERFAMILY ISP transmembrane anchor 92 148 - -
Enbr1g09122 275 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 80 275 IPR014349 GO:0005750(PANTHER)|GO:0006122(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Enbr1g09122 275 Pfam Ubiquinol cytochrome reductase transmembrane region 108 146 IPR004192 GO:0008121(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr1g09122 K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:7.1.1.8]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr1:283139278 Enbr1g09122 Enbr-Chr1:283144358 tandem