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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01265 ATGATGGACAGACATTCGGTTGCTTTGTTTACATTCCTTTTGTTCATTTTTGTTCTTAATATCTCAGAAATCGCGGCGGTGAAGTCAAAAATATGTGAAAAACCAAGCAAGACATGGTTTGGAGACTGCAAACACACAGAAAAGTGCGACGAACGATGCATAGATTGGGAGGGGGCTAAGCATGGAGCTTGCCACCAACGTGAAGCCAAATACATGTGCTTTTGCTACTTTGATTGTGATAGCAAAAAGAATCCTAAAGTACCAAAACCTCCTCCAGGTGCTCCTACTAAGCCTCCAGAAGGTGGCGGTGAAGGGGACGCTCCACCAGAAGGCGGTGAAGGAGGAGGTGGTGGTGAAGGAGGAGGCGGCGGTGAAGGAGGCGGTGGTGAAGGAGGAGGTGGTGGTGGTGAAGGAGGCGGCGGTGAAGGAGGTGGTGGTGGTGGTGAAGGAGGTGGCGGCGGTGAAGGAGGAGGTGGTGAAGGAGGTGGCAGATAA 495 51.31 MMDRHSVALFTFLLFIFVLNISEIAAVKSKICEKPSKTWFGDCKHTEKCDERCIDWEGAKHGACHQREAKYMCFCYFDCDSKKNPKVPKPPPGAPTKPPEGGGEGDAPPEGGEGGGGGEGGGGGEGGGGEGGGGGGEGGGGEGGGGGGEGGGGGEGGGGEGGGR 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01265 164 ProSitePatterns Gamma-thionins family signature. 30 53 IPR008176 GO:0006952(InterPro)
Enbr6g01265 164 SUPERFAMILY Scorpion toxin-like 30 79 IPR036574 -
Enbr6g01265 164 PANTHER DEFENSIN-LIKE PROTEIN 1 5 79 - GO:0006952(PANTHER)
Enbr6g01265 164 SMART gth-4 31 79 IPR003614 GO:0006952(InterPro)
Enbr6g01265 164 Pfam Gamma-thionin family 30 79 - -
Enbr6g01265 164 Gene3D - 31 79 IPR036574 -
Enbr6g01265 164 MobiDBLite consensus disorder prediction 83 164 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01265 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:44399263 Enbr6g01268 Enbr-Chr6:44700679 proximal
Enbr Enbr-Chr6:44389749 Enbr6g01265 Enbr-Chr6:44399263 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Enbr6g01266 . 8 78 Plant Defensins gene family AT1G19610 41.667 1.81e-12 57.4
Enbr6g01267 . 5 78 Plant Defensins gene family AT1G19610 39.189 3.22e-13 58.5
Enbr6g01268 . 13 78 Plant Defensins gene family AT1G19610 57.576 1.05e-25 90.1
Enbr6g01262 . 23 78 Plant Defensins gene family AT1G19610 59.649 1.10e-19 75.1
Enbr6g01264 . 22 78 Plant Defensins gene family AT1G19610 45.614 4.80e-15 66.6
Enbr6g01265 . 1 78 Plant Defensins gene family AT1G19610 45.57 1.75e-18 73.6