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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01279 ATGGGACCTCCAGATCTAAACATACCGCCGTACGTTTCCAAGATCGTGAATATCCAATCCTTGGATAACAATGTGGAAGTTAAGGTTAGGTGGTACTATAGACCTGAAGAGACTAAAGGTGGCAGAAAACCATATCATGGAGTGAATGAAGTTTTCTTGTCCGATCATTTTGATACACAAAGTGTTCATTCGATCGTAGGCACATGTACCGTTCATAACTACTTCAGCTATATCAGGCGTGACGTTGTTGATAACAAGGATTTTTTCAGTCGTTTTAAGTACTTTCCAGTAACAGGACAGTTTGATCCGGATAGAGCACGCGTGTACTGTATGTGTGAGATGCCTTATAATCCTGATTTCTTGATGATTGAATGTGAAGATTGCAATGATTGGTATCATCCTAATTGTATAAACATGTCAGTGGATGAGGCTAAACAACTTGATCACTTCATTTGTCAGATATGTTTGGCCAAAAGGTCAACAATTCTCCACAATCATCATGCTGCTATTTCTAGGAATGACTAG 525 39.24 MGPPDLNIPPYVSKIVNIQSLDNNVEVKVRWYYRPEETKGGRKPYHGVNEVFLSDHFDTQSVHSIVGTCTVHNYFSYIRRDVVDNKDFFSRFKYFPVTGQFDPDRARVYCMCEMPYNPDFLMIECEDCNDWYHPNCINMSVDEAKQLDHFICQICLAKRSTILHNHHAAISRND 174
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01279 174 PANTHER OS08G0421900 PROTEIN 3 162 - -
Enbr6g01279 174 Gene3D - 1 102 IPR043151 -
Enbr6g01279 174 ProSiteProfiles Zinc finger PHD-type profile. 107 158 IPR019787 -
Enbr6g01279 174 ProSiteProfiles BAH domain profile. 1 105 IPR001025 GO:0003682(InterPro)
Enbr6g01279 174 SMART BAH-4 1 105 IPR001025 GO:0003682(InterPro)
Enbr6g01279 174 Pfam BAH domain 8 103 IPR001025 GO:0003682(InterPro)
Enbr6g01279 174 ProSitePatterns Zinc finger PHD-type signature. 110 155 IPR019786 -
Enbr6g01279 174 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 103 172 IPR013083 -
Enbr6g01279 174 SUPERFAMILY FYVE-PHD zinc finger 98 163 IPR011011 -
Enbr6g01279 174 Pfam PHD-finger 110 155 IPR019787 -
Enbr6g01279 174 SMART PHD-3 109 156 IPR001965 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01279 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
87003 Enbr4g02716 Enbr6g01279
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:45190708 Enbr6g01355 Enbr-Chr6:47036369 dispersed
Enbr Enbr-Chr4:94136273 Enbr6g01279 Enbr-Chr6:45190708 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Enbr BAH 3.4e-13 CL0010 TR PHD