AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01293 ATGACGAATAACAAGTTCACGATGCTGATCATTAATCTCACATTGTCTTTACTCTTGATTTCCCATGTCGTCGTGGTCGTAGCAAGCGCCAACGAATTAGATATCGTCATCCGTCAAGTTACTGGAGACGAAGCAGACCATCGTCACAGGAACAACTTTAACGTGTTCAAAAAAAAGTTTAACAAATTTTACGCGTCACTAGAAGAAGACGAGTACAGGTTTTCTGTTTTCAAGACTAATTGGAATCGCGCAATGCGTAATCAAAAACTTGATCCATCTGCTACGCATGGGATCACTCAGTTTTCTGATATGACGTCTAAGGAGTTTAAGAAGCATCTAGGGTTGACGTCTCGACGTCTTAGGGTCCCTGCTGATGCTGGCGAGGCACCGATCTTGCCCACGGATGATTTACCGGATGATTTTGATTGGAGAGATCATGGTGCTGTTACTGAAGTCAAGAATCAGGCTTCATGCGGGTCATGCTGGTCGTTTAGTACAACTGGGGCGTTAGAAGGTGCGCATTTCCTTGCTACGGGTAAACTTGAAAGCCTAAGCGAGCAGCAACTTGTTGATTGTGATCATGAGTGTGATCCAGAAGTACAAGGATCATGCGATTCAGGGTGTAATGGAGGTCTTATGAATAGTGCTTTCGAGTACACTCTCAAAGCTGGCGGGCTTATGAGGGAAAAAGACTATCCATACACAGGAACTGACAACGGTACCTGCAAATTTGATAAAGATAAAGTTGTAGCATCGGTGAGTAACTTTAGTGTGGTATCCCTTGACGAAGACCAGATTGCTGCCAATCTTGTCAAAAACGGTCCTCTTGCAGTGGCGTTAAATGCAGCTTACATGCAGACATATGTTGGGGGAGTGTCGTGCCCCTACATATGCTCAAAGAAGTTAGACCATGGTGTGCTATTGGTCGGATATGGAAAGGCTGGATATTCTCCGATAAGAAGGAAAGAAAAGCCATACTGGATCATCAAGAACTCTTGGGGACCGGATTGGGGAGAGAAGGGATATTACAAGATCTGCAAAGGTCGTAATGTGTGTGGTGTCGATTCCATGGTCTCCACAGTCGTTGCAGTTAACCGACACTAA 1104 44.75 MTNNKFTMLIINLTLSLLLISHVVVVVASANELDIVIRQVTGDEADHRHRNNFNVFKKKFNKFYASLEEDEYRFSVFKTNWNRAMRNQKLDPSATHGITQFSDMTSKEFKKHLGLTSRRLRVPADAGEAPILPTDDLPDDFDWRDHGAVTEVKNQASCGSCWSFSTTGALEGAHFLATGKLESLSEQQLVDCDHECDPEVQGSCDSGCNGGLMNSAFEYTLKAGGLMREKDYPYTGTDNGTCKFDKDKVVASVSNFSVVSLDEDQIAANLVKNGPLAVALNAAYMQTYVGGVSCPYICSKKLDHGVLLVGYGKAGYSPIRRKEKPYWIIKNSWGPDWGEKGYYKICKGRNVCGVDSMVSTVVAVNRH 367
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01293 367 SMART Inhibitor-I29-2 53 109 IPR013201 -
Enbr6g01293 367 Pfam Cathepsin propeptide inhibitor domain (I29) 53 109 IPR013201 -
Enbr6g01293 367 SUPERFAMILY Cysteine proteinases 47 362 IPR038765 -
Enbr6g01293 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 155 166 IPR000169 -
Enbr6g01293 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 326 345 IPR025661 -
Enbr6g01293 367 PRINTS Papain cysteine protease (C1) family signature 326 332 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Enbr6g01293 367 PRINTS Papain cysteine protease (C1) family signature 304 314 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Enbr6g01293 367 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Enbr6g01293 367 CDD Peptidase-C1A 138 361 IPR039417 -
Enbr6g01293 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 59 354 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Enbr6g01293 367 FunFam Cysteine protease RD19A 35 362 - -
Enbr6g01293 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 302 312 IPR025660 -
Enbr6g01293 367 Pfam Papain family cysteine protease 137 361 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Enbr6g01293 367 SMART pept-c1 137 362 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Enbr6g01293 367 Gene3D Cysteine proteinases 28 363 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01293 K01373 cathepsin F [EC:3.4.22.41]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr1:149246449 Enbr6g01293 Enbr-Chr6:45324156 dispersed
Enbr Enbr-Chr4:94103460 Enbr6g01293 Enbr-Chr6:45324156 dispersed
Enbr Enbr-Chr4:94112866 Enbr6g01293 Enbr-Chr6:45324156 dispersed
Enbr Enbr-Chr6:45324156 Enbr9g01466 Enbr-Chr9:63860256 dispersed
Enbr Enbr-Chr1:149247112 Enbr6g01293 Enbr-Chr6:45324156 transposed
Enbr Enbr-Chr2:46114661 Enbr6g01293 Enbr-Chr6:45324156 transposed
Enbr Enbr-Chr7:20782395 Enbr6g01293 Enbr-Chr6:45324156 transposed
Enbr Enbr-Chr7:46097749 Enbr6g01293 Enbr-Chr6:45324156 transposed
Enbr Enbr-Chr2:151982347 Enbr6g01293 Enbr-Chr6:45324156 wgd
Enbr Enbr-Chr4:94102797 Enbr6g01293 Enbr-Chr6:45324156 wgd