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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01304 ATGAAGATCCAATGCGATGTTTGTCACAAATCCGAAGCAGTCGTTTACTGCACTGCCGACGAGGCGTCTCTTTGCAACGCTTGTGACCACCGTGTTCACCATGCTAATAAACTTGCTAGCAAACATCCTCGTTTCTCTTTACTCAATCCTTCTGTTAAAGACTCTCCTCGTTGTGATATTTGTCAGGAGAGAAGAGCTTTTTTGTTTTGCAAAGAAGACCGGGCGATTTTATGTAGAGAATGTGACATTCCAATACACACGGCAAACGAACACACACAAAAACACACCCGGTTTCTTCTCACGGGCGTGAAGCTCTCGACATCGTTATCTTGTTATGATAATTCTTCATTTCAACAAACTCCTTGTTCCTCAAACTCAAACTGTTCTATCGAAAATGATAGTACAAAAGGTTTTGGGGCTTGGAATGATCAAAGGGGTGCTTCAATTAGTCCTAATGATTCGAATTGTAGTATGAGTCATGACCATGAAGAAGGTGGCAGGAGTATTTCCGAGTATTTGATGGAAACACCCGGATGGCATCTTGATGAATTTCTTGATGATCCTTATGCCTTTGGTAATTAG 582 41.58 MKIQCDVCHKSEAVVYCTADEASLCNACDHRVHHANKLASKHPRFSLLNPSVKDSPRCDICQERRAFLFCKEDRAILCRECDIPIHTANEHTQKHTRFLLTGVKLSTSLSCYDNSSFQQTPCSSNSNCSIENDSTKGFGAWNDQRGASISPNDSNCSMSHDHEEGGRSISEYLMETPGWHLDEFLDDPYAFGN 193
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01304 193 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Enbr6g01304 193 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Enbr6g01304 193 CDD Bbox1-BBX-like 58 100 IPR049808 -
Enbr6g01304 193 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Enbr6g01304 193 CDD Bbox1-BBX-like 5 47 IPR049808 -
Enbr6g01304 193 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 187 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Enbr6g01304 193 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Enbr6g01304 193 FunFam B-box zinc finger protein 21 1 98 - -
Enbr6g01304 193 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270(InterPro)
Enbr6g01304 193 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270(InterPro)
Enbr6g01304 193 Gene3D Classic Zinc Finger 1 100 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01304 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:45532913 Enbr9g01459 Enbr-Chr9:63562789 dispersed
Enbr Enbr-Chr5:36480770 Enbr6g01304 Enbr-Chr6:45532913 transposed
Enbr Enbr-Chr6:27720795 Enbr6g01304 Enbr-Chr6:45532913 transposed
Enbr Enbr-Chr2:151875217 Enbr6g01304 Enbr-Chr6:45532913 wgd
Enbr Enbr-Chr4:41380144 Enbr6g01304 Enbr-Chr6:45532913 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Enbr3g04273 ACH 268 327 C2C2-CO-like Transcription Factor family AT5G15850 37.5 5.78e-08 51.6
Enbr6g00789 ACH 1 277 C2C2-CO-like Transcription Factor family AT1G78600 51.93 3.98e-83 249.0
Enbr1g06202 ACH 279 326 C2C2-CO-like Transcription Factor family AT5G57660 50.0 1.43e-09 55.5
Enbr1g06393 . 1 77 C2C2-CO-like Transcription Factor family AT4G27310 56.41 4.70e-29 106.0
Enbr6g02001 . 9 355 C2C2-CO-like Transcription Factor family AT5G57660 40.761 8.43e-75 233.0
Enbr4g03090 . 7 354 C2C2-CO-like Transcription Factor family AT5G57660 45.38 3.19e-91 275.0
Enbr6g02196 . 277 330 C2C2-CO-like Transcription Factor family AT5G57660 51.852 6.03e-11 60.1
Enbr1g03732 . 10 283 C2C2-CO-like Transcription Factor family AT1G68190 38.636 1.27e-56 187.0
Enbr6g01488 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.278 2.35e-131 380.0
Enbr2g04557 ACH 1 326 C2C2-CO-like Transcription Factor family AT1G75540 42.075 4.54e-69 216.0
Enbr2g01948 ACH 11 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 9.44e-103 305.0
Enbr8g02778 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 48.312 1.49e-94 286.0
Enbr1g09141 ACH 12 401 C2C2-CO-like Transcription Factor family AT2G33500 37.358 1.06e-72 232.0
Enbr8g02445 . 1 114 C2C2-CO-like Transcription Factor family AT4G27310 47.826 2.13e-31 112.0
Enbr1g09000 . 289 399 C2C2-CO-like Transcription Factor family AT1G68520 41.176 8.77e-20 87.8
Enbr1g05639 . 269 399 C2C2-CO-like Transcription Factor family AT1G68520 41.667 4.57e-21 92.4
Enbr1g04266 . 73 319 C2C2-CO-like Transcription Factor family AT3G02380 28.667 3.27e-17 79.3
Enbr8g00686 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.156 3.79e-132 381.0
Enbr5g02997 . 221 278 C2C2-CO-like Transcription Factor family AT2G24790 44.828 1.33e-10 60.1
Enbr6g01304 . 1 196 C2C2-CO-like Transcription Factor family AT1G75540 53.769 3.16e-61 191.0
Enbr7g00637 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 6.25e-11 59.7
Enbr2g00381 . 3 98 C2C2-CO-like Transcription Factor family AT5G54470 55.67 8.66e-31 111.0
Enbr8g00719 . 171 299 C2C2-CO-like Transcription Factor family AT1G78600 45.39 1.81e-22 89.0
Enbr9g01459 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.732 8.91e-78 239.0
Enbr6g01667 . 252 319 C2C2-CO-like Transcription Factor family AT3G02380 39.706 7.84e-09 53.9
Enbr3g04880 . 315 386 C2C2-CO-like Transcription Factor family AT5G24930 43.836 6.10e-11 61.6
Enbr3g00202 ACH 12 347 C2C2-CO-like Transcription Factor family AT3G02380 50.646 8.63e-119 347.0
Enbr4g01295 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 56.349 1.69e-135 388.0
Enbr4g01213 ACH 1 196 C2C2-CO-like Transcription Factor family AT1G75540 55.779 6.35e-65 202.0
Enbr1g08768 . 284 330 C2C2-CO-like Transcription Factor family AT5G57660 53.191 2.02e-10 59.7
Enbr1g05886 . 1 77 C2C2-CO-like Transcription Factor family AT4G27310 56.41 4.70e-29 106.0
Enbr7g03065 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 6.25e-11 59.7
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Enbr zf-B_box 4.4e-07 CL0782 TF DBB