AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01319 ATGGATGATAAACATAAAATCAAAATTGCTGTTACCATATCTTGTTTAGCAGTTGTTTCAATCTTATTTGTCAACAAATTTCTTAAACACAGAAAACGAAAACACAACAACAACATTAATTCATGTTACCTGAAATCTCAAGTTAAACCTCAACACACTTTCAAACGTGTTTTGGCCAACAATTCTTATGCCCCCTTTAAACATCTCAAGCTCCAGGATGGTTCTACGGATTTACATCCGTATGAATCTGAGATCATGGATTTGATGGAGAAACTACTATTGGATTTTAAGTTTTCTAATGGAATTACGGATATGGGTGATAAGTATGTTTGGGTTGACAATGAATCGAAGTTAAAAGAACTCGTGGAGGTATTAAGTAAAGAAAGAGTGTTTGCGGTGGATACCGAGCAACATAGCTTACATTCATTCTTGGGGTTTACCGCTCTTATTCAGATTTCTACGAAGGATGAAGATTATTTGGTGGACACTATTGCTCTTCATGACAGTATGGGAATTCTTGCCCCCTTATTTGCTGATCCTAATATGTGCAAGGTCTTCCATGGTGCTGATAATGACGTTATATGGCTACAAAGAGATTTTCATATTTACGTTGTAAACTTATTTGACACTGCAAAGGCATGCGATTTGCTATCAAAGCCACAAAGATCATTAGCCTACTTACTTGAAACATATTGTGGCGTCACAACTAACAAGCTTTATCAGCGTGAAGATTGGCGACAACGTCCTCTGTCAACTGATATGGTTGAATATGCGCGAATGGATGCACACTATTTGCTGTATATTGCAGATTGCCTCGTTTCTGAGCTCCGACTCCAGAAGAATGAAAATTCAGCCGGTCCCGATGACAAATTAGATCTTGTTTTCGAGGCCATCCGGCGTTCGAATGCCTTGTGTCTGCAACTCTTCTCCAAAGAACTAGAAGCTTCCCCAGGGCAGTCTGCTGCTTCTTCAATTATTTCCCGATACTTGAACGATCTTGGAAGTTCTACAGCCAACATGCAGGATCTTGTTAGACGTCTCTGCTCTTGGAGAGATTTGACGGCCCGTATTCATGATGAGAGCCTTAAATATGTACTATCCGATAGTGCTGTTGTCGCTCTTGCTGAAAAAAGTCCATTAACTACTACAGATATTTGCGCCACAATATCACAGGCTGATATGGACGTTGATGTTCTCAGTTCGAGTTCTGCCCCTCGGTGTCCATCCTCTGTTGTCCTGAGTCATTTAGACGTCTTCCCTCGCCTTCTACAAGACGAGATCAACAATCTTGATGATATATTTCAACTAGTTCTTATGAAGCACCTTGGTCCAAATGGTTCTTGTCCTTTATCTCTTTATAATTATGGCCTGTTGTCTAAAACCAACATCAAAGTATCAGATAGATTATCTTCAAAAGGAAATAGGCATAAGCTTTTTAAACAAGTTGCACGGAAGGCTTCTCGGGAGCTTTTTGTCCAGAAGTTCTCCTGCAAAGCTCCAGTCTATCATAACTGCAGAATATATGCCAATGATGGGCGACTATTATGTTACTGTGATCGAAAGAAGTTAGAATGGTATCTACAACGGGATCTGGCAAAAGTTGTTGATGAAGATCCACCAGCCATTATGCTTCTCTTTGAACCCAAAGGGCGCCCTGAAGATGAAGGAAATGAATTCTATATCCATAGTAAGAAAAATATATGCGTAGGTTGTGGGGAAGGAAACCACTATTTACGATACCGTATCATCCCATCATGTTATCGGATACACTTCCCAGAGCATTTGAAGAGTCACCGCTCTCATGATATTGTTCTAGTTTGTGTCGATTGTCATGAAAAAGCACATTCTTCTGCCGAGAAGTACAAGAAAAAAGTAGCTTCTGAATTTGGGATACCCCTATTTGTGCACAAAGTGGTTGACTCTAATGACGAACATGATTCCGGATCTTCCACTTCTGCATTGAAAGTTGGTGATGGTGGCGTGTCCCCTTTAGAGTTGAGAACTGCAGCAATGGCTCTCATAAGACATGGACCTAGGATGCCCCCTCAGCGTCGTGAAGAATTGAAACAGGTTGTTATGAAGTACTATGGAGGCAGAGATATATCAGAGGAAGACCTAGAAAACGCACTACTAGTTGGAATGAGTCCTCATGAGAGAAGACGACTACGGAAAAAGAGAGGTTTGTCTCTTAATAACTCCTCAGGAAACATTGTGTCAGACAAGGAAGTCGAGAGCAGGAATGGAGGTGTGCAGCTTTCCTCCCCTGATAAGTCATTAAATGTTGATAAGGAAGACAGATCAGATAATATTAGTAACAGCCCTTATATAAATTCAGAATTTAACGAAAATGAAAGTTCTGAGCTTGAAAATGCATCTGTTGTGGATATGGATGTTGCGGATTCATCTGCTAAAGTAAATGGCTCTATTCACCAAAGTGGTGATGGTGTGGGCTTCGCTTCATGTAGTTCAAAGCTGTCTTTATTAGGCCATGGACCTCATGGGAAGCAAGTGGTTGATTTTCTGCTGAAGGAACATGGAGAAGACGGGATTCGTGAGTTTTGTCAAAGATGGAGACAAGTATTTGTTGAAGCCATTCATCCTCGTTTTTTACCTGCTGGTTGGGATGTGACACACAG 2636 40.74 MDDKHKIKIAVTISCLAVVSILFVNKFLKHRKRKHNNNINSCYLKSQVKPQHTFKRVLANNSYAPFKHLKLQDGSTDLHPYESEIMDLMEKLLLDFKFSNGITDMGDKYVWVDNESKLKELVEVLSKERVFAVDTEQHSLHSFLGFTALIQISTKDEDYLVDTIALHDSMGILAPLFADPNMCKVFHGADNDVIWLQRDFHIYVVNLFDTAKACDLLSKPQRSLAYLLETYCGVTTNKLYQREDWRQRPLSTDMVEYARMDAHYLLYIADCLVSELRLQKNENSAGPDDKLDLVFEAIRRSNALCLQLFSKELEASPGQSAASSIISRYLNDLGSSTANMQDLVRRLCSWRDLTARIHDESLKYVLSDSAVVALAEKSPLTTTDICATISQADMDVDVLSSSSAPRCPSSVVLSHLDVFPRLLQDEINNLDDIFQLVLMKHLGPNGSCPLSLYNYGLLSKTNIKVSDRLSSKGNRHKLFKQVARKASRELFVQKFSCKAPVYHNCRIYANDGRLLCYCDRKKLEWYLQRDLAKVVDEDPPAIMLLFEPKGRPEDEGNEFYIHSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLVCVDCHEKAHSSAEKYKKKVASEFGIPLFVHKVVDSNDEHDSGSSTSALKVGDGGVSPLELRTAAMALIRHGPRMPPQRREELKQVVMKYYGGRDISEEDLENALLVGMSPHERRRLRKKRGLSLNNSSGNIVSDKEVESRNGGVQLSSPDKSLNVDKEDRSDNISNSPYINSEFNENESSELENASVVDMDVADSSAKVNGSIHQSGDGVGFASCSSKLSLLGHGPHGKQVVDFLLKEHGEDGIREFCQRWRQVFVEAIHPRFLPAGWDVTH 878
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01319 878 Pfam HRDC domain 341 384 IPR002121 GO:0003676(InterPro)
Enbr6g01319 878 SUPERFAMILY HRDC-like 341 391 IPR010997 GO:0000166(InterPro)|GO:0044237(InterPro)
Enbr6g01319 878 MobiDBLite consensus disorder prediction 728 757 - -
Enbr6g01319 878 SUPERFAMILY Ribonuclease H-like 48 279 IPR012337 -
Enbr6g01319 878 Pfam 3'-5' exonuclease 109 276 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Enbr6g01319 878 Gene3D - 26 315 IPR036397 GO:0003676(InterPro)
Enbr6g01319 878 MobiDBLite consensus disorder prediction 770 784 - -
Enbr6g01319 878 ProSiteProfiles HRDC domain profile. 337 426 IPR002121 GO:0003676(InterPro)
Enbr6g01319 878 PANTHER POLYMYOSITIS-SCLERODERMA AUTOANTIGEN-RELATED 30 875 IPR045092 GO:0000175(InterPro)|GO:0000175(PANTHER)|GO:0000176(PANTHER)|GO:0000467(PANTHER)|GO:0000467(InterPro)|GO:0003727(PANTHER)|GO:0005730(PANTHER)|GO:0071035(PANTHER)|GO:0071036(PANTHER)|GO:0071037(PANTHER)|GO:0071038(PANTHER)|GO:0071039(PANTHER)|GO:0071040(PANTHER)|GO:0071044(PANTHER)|GO:0071051(PANTHER)
Enbr6g01319 878 MobiDBLite consensus disorder prediction 721 784 - -
Enbr6g01319 878 CDD Rrp6p-like-exo 109 299 IPR049559 -
Enbr6g01319 878 SMART 35exoneu6 109 277 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Enbr6g01319 878 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 48 315 - -
Enbr6g01319 878 Gene3D HRDC domain 329 434 IPR044876 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01319 K12951 cobalt/nickel-transporting P-type ATPase D [EC:7.2.2.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr3:54459208 Enbr6g01319 Enbr-Chr6:46071509 dispersed
Enbr Enbr-Chr6:46071509 Enbr1g00595 Enbr-Chr1:17133951 transposed