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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01353 ATGACATCATCATCACAAGAGAATAAAGCATTAGCAAGTCTTAAAGAGATGGAGAAGGTTATAGGGTATAAGTTCAAGAAAAAGGATTTGTTGCAACAAGCGTTTACGCATCCAAGTTATCAAGGAGCTGAATCATATGAAAGACTCGAGTATGTTGGTGATTCCATTCTAAATTTTCTAATCAGTAAACAACAGTTCTTTATGTACCCGAATCTCCCACCAGGATCATTGACTGCACTTCGAGCTGCCAACGTTGACACTGAGAAGCTAGCACGTGTAGCAGTTAAATATAACTTTCATAAGTACCTACGCCATGAGAATCCAATGCTTAGCAAGCAGATTCGAGTGTTTACGAGTGCTCTTGAAAAGTATCCCTTACATTCATTTGGGTTAATTGATGCTCCAAAGACTTTAGCCGATATTGTTGAATCCACAATAGGAGCTATCTACGTTGACAGCAATTCTTCAATCGATACCACATGGGAGGTAGCTAAAGTTCTACTCGAGCCCATGATCACTCCTGAAATGCTCCAACACAATCCAGTAAGGAAGCTCAATGAACTCTGTCACAAAAAGAAACTGAAGATACGATTCAGAGACAAATGGTCAAAACAAGGAGTGTACGAAGTTTTTGTTGATAATCAACTTAAAGGAAGAGGTGAATACAAAGCAAAGAAGGAAATTGCGTTGAATAGAGCAGCTGAGGATGCATGTAACAACATTTTGAACAGCATTTATAAAAAACATACGCAAATGTCCGAGTTAGTCACCGAGCCATGCTCACCATTATTTTTGCCAAGCCTTATGGACGTTGAGACGATCATAGGATACAACTTCAAAAACAAAGACTTACTGAAAGAAGCTTTAACACATCATTCATACAAAGACGATATTTGTCAATCTTACGAGCGACTTGAGTACCTTGGAGACTCGGTTTTAAACCTTATGATCACCAAGGAACATTATTTCTTGTACCCGAAAATGAAGTCTGGTGACTTGACTCTATTACGTGCGGCTAATGTTGATACCGAAGCTTTGGCCCGTGTTGCATTTAAACATGGTTTGCATAGATATCGTCGAGTCTATAATTGGTGCAGTTTATGTCGATACCAACTTATCCATGGACGATACATGGGAGTTGGCGAAGAAGTTGTTACAACCTTTGACAACGTCGGAAAACCTCAACTTGAACCCGGTGACAAAGTTGAACCAAACGTGCCAGAAGATGGGAATAAAGCTCGAGTACAAAAATTTGTGGGTCGAGAAAGGGGATATTGA 1278 39.67 MTSSSQENKALASLKEMEKVIGYKFKKKDLLQQAFTHPSYQGAESYERLEYVGDSILNFLISKQQFFMYPNLPPGSLTALRAANVDTEKLARVAVKYNFHKYLRHENPMLSKQIRVFTSALEKYPLHSFGLIDAPKTLADIVESTIGAIYVDSNSSIDTTWEVAKVLLEPMITPEMLQHNPVRKLNELCHKKKLKIRFRDKWSKQGVYEVFVDNQLKGRGEYKAKKEIALNRAAEDACNNILNSIYKKHTQMSELVTEPCSPLFLPSLMDVETIIGYNFKNKDLLKEALTHHSYKDDICQSYERLEYLGDSVLNLMITKEHYFLYPKMKSGDLTLLRAANVDTEALARVAFKHGLHRYRRVYNWCSLCRYQLIHGRYMGVGEEVVTTFDNVGKPQLEPGDKVEPNVPEDGNKARVQKFVGRERGY 425
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01353 425 SMART riboneu5 29 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 SMART riboneu5 283 401 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 Gene3D Ribonuclease III domain 264 415 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 ProSitePatterns Ribonuclease III family signature. 303 311 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 ProSiteProfiles Ribonuclease III family domain profile. 14 154 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 PANTHER DICER-RELATED 8 246 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Enbr6g01353 425 Pfam Double-stranded RNA binding motif 181 240 IPR014720 -
Enbr6g01353 425 SUPERFAMILY RNase III domain-like 13 174 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 Gene3D - 177 253 - -
Enbr6g01353 425 ProSitePatterns Ribonuclease III family signature. 47 55 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 CDD RIBOc 283 360 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 Pfam Ribonuclease-III-like 281 360 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 CDD RIBOc 29 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 SUPERFAMILY RNase III domain-like 267 361 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 ProSiteProfiles Ribonuclease III family domain profile. 268 358 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 FunFam Endoribonuclease dicer-like 1 8 175 - -
Enbr6g01353 425 SUPERFAMILY dsRNA-binding domain-like 136 241 - -
Enbr6g01353 425 Gene3D Ribonuclease III domain 2 176 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g01353 425 Pfam Ribonuclease III domain 47 153 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01353 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr5:38375652 Enbr6g01353 Enbr-Chr6:46984544 transposed
Enbr Enbr-Chr5:94894081 Enbr6g01353 Enbr-Chr6:46984544 transposed
Enbr Enbr-Chr6:78519035 Enbr6g01353 Enbr-Chr6:46984544 transposed
Enbr Enbr-Chr4:40827869 Enbr6g01353 Enbr-Chr6:46984544 wgd