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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01356 ATGGAAGAACACACGACGACCACCGGAGGAGAACAACCACACCCTCACCAAAACCTAATCACACAATTCTCCGAAATCACCTCTGCTTCCCTTCAAGAAGCCACTTTCTTTCTCGAATCACACAATTTCGATCTCGATTCCGCCGTTTCCACCTTCTTCGAAACCACCACCGCCGCCGCCGCCGCCGATCAACGGAACCCTAATCTTAACCCTACCATTCCAACCGATGATCTCGTTTCTCCGGCTTCTTCACCGTCTCGTTCCCGATCAGCTTCTCCACCTCCGTCTTTTGGTTTACAACAAGTGGCTGCTGGTGCTGGAAATCCGTATAATCTTCGGTCTCGGAATGGCGGTGGTTCGGATAAGAAGAAGGCGTCTGGTAGTCGGATTCGTACGTTTTCCGATCTGAATCAAACCGGTGGCGGTGGCTCCGGTGATGATTCAGATGAGCCTCAGGAGTACTACACCGGTGGTCATAAGAGTGGAATGCTTGTTCAGGATCCTAAAAAGGTGAATGATGTGGATGCACTCTTTAACCAAGCTAGGCAAGCAGGAGCTGAACAAGGACCTCATGATCAACTCCAACCATCTTCAAGCTCCAGAAACTTTGCTGGAAGAGGAAGAATTCTGTCTGGAGTGACAACATCATCTGATGCACCTCAGCAAGTTGAAGCTGAACCCCACACACACACAATCACTTTCTGGACCAATGGTTTCACTGTGAATGATGGTCCTTTGAGGAGGCTGGATGATCCTCAAAATGCATCTTTCTTAGAGAGCATAAGAAAATCTGAGTGTCCCGATGAACTTAGGCCTGCAAAAGGAAGAGCACCTGTCCATGTTAGTCTTGTGAAGAAGTCGGAGGATTACCCTGTCCAGAAACACCGCCCTGCTGCCTTTGCGGGGGTGGGTAGAACCTTAGGCACCGCCAGTTCTTCAGATGATACAGCTGCCACCAGTGCCTCTGTTCCTTTAGCCGCTGCCCCAGCCCCATTTGTGGGACTAGCTGTGGATAGCACATTACCCTCTACCTCCATACAACTGAGATTGGCTGATGGAACCCGTATGGTTTCACGCTTCAATTTGCACCACACTATAAACCATATCCGTTCTTTCATTGATGCATCAAGACCCGGAGGGTCCAGGACTTATCAGTTAATGACCATGGGATTTCCTCCAAAGCAGCTCAACGATTTGAGTCAGACCATTGAAGATGCTGGGTTAGCTAATTCGGTTGTCATCCAGAAACTCTAA 1254 49.2 MEEHTTTTGGEQPHPHQNLITQFSEITSASLQEATFFLESHNFDLDSAVSTFFETTTAAAAADQRNPNLNPTIPTDDLVSPASSPSRSRSASPPPSFGLQQVAAGAGNPYNLRSRNGGGSDKKKASGSRIRTFSDLNQTGGGGSGDDSDEPQEYYTGGHKSGMLVQDPKKVNDVDALFNQARQAGAEQGPHDQLQPSSSSRNFAGRGRILSGVTTSSDAPQQVEAEPHTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPDELRPAKGRAPVHVSLVKKSEDYPVQKHRPAAFAGVGRTLGTASSSDDTAATSASVPLAAAPAPFVGLAVDSTLPSTSIQLRLADGTRMVSRFNLHHTINHIRSFIDASRPGGSRTYQLMTMGFPPKQLNDLSQTIEDAGLANSVVIQKL 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01356 417 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 226 311 IPR036241 -
Enbr6g01356 417 SMART ubx-3 338 417 IPR001012 GO:0005515(InterPro)
Enbr6g01356 417 MobiDBLite consensus disorder prediction 130 145 - -
Enbr6g01356 417 MobiDBLite consensus disorder prediction 184 205 - -
Enbr6g01356 417 SUPERFAMILY Ubiquitin-like 300 415 IPR029071 -
Enbr6g01356 417 ProSiteProfiles UBX domain profile. 339 416 IPR001012 GO:0005515(InterPro)
Enbr6g01356 417 MobiDBLite consensus disorder prediction 190 205 - -
Enbr6g01356 417 Gene3D SEP domain 228 289 IPR036241 -
Enbr6g01356 417 SMART faf-3 224 317 IPR012989 -
Enbr6g01356 417 FunFam Plant UBX domain-containing protein 4 292 417 - -
Enbr6g01356 417 Pfam SEP domain 232 305 IPR012989 -
Enbr6g01356 417 Pfam UBA-like domain 17 56 - -
Enbr6g01356 417 Gene3D - 292 417 - -
Enbr6g01356 417 MobiDBLite consensus disorder prediction 62 165 - -
Enbr6g01356 417 CDD UBX-UBXN2 345 416 - -
Enbr6g01356 417 Gene3D - 15 55 - -
Enbr6g01356 417 PANTHER UBX DOMAIN CONTAINING PROTEIN 15 416 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Enbr6g01356 417 FunFam Plant UBX domain-containing protein 4 227 289 - -
Enbr6g01356 417 ProSiteProfiles SEP domain profile. 227 291 IPR012989 -
Enbr6g01356 417 CDD UBA-CF106 16 54 IPR039517 -
Enbr6g01356 417 SUPERFAMILY UBA-like 15 54 IPR009060 GO:0005515(InterPro)
Enbr6g01356 417 MobiDBLite consensus disorder prediction 62 97 - -
Enbr6g01356 417 Pfam UBX domain 342 416 IPR001012 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01356 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr1:229574591 Enbr6g01356 Enbr-Chr6:47042796 dispersed
Enbr Enbr-Chr5:29765029 Enbr6g01356 Enbr-Chr6:47042796 dispersed