AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01451 ATGGATTTCTCAGAATCTACAAAAATCGTATACGACAGGATTCAAAAGATAGAGCCCGAAAACGTGTCCAAGATTATCGGGTATCTTCTTTTACAGGATCATGGGGAGAGAGAGATGATAAGGTTAGCCTTTGGCCCTGATAATTTAATCTACTCTTTGATCAATAAGGCAAAAACCCACCTGAAATTACCTTCAAATACATCCGCTGGTCAACCACTTTCGCCTCCTAACGCCAATTCCATCCCTGAAATGCCGATACACTTTACACCGTTCTCTCCTTCACACCGTCATTCACCATTGACTATTCAAGTCCCGACCCGTTGTTGTGATCCCCATGGTCAACCTGTTGACTACGTTCCTATGGTATATCCTGCTTCTTATCCTGAAGATTATCGTCTTCACAACCATCTTCGTTTCATGTCATTAGAAGATCAAGTTGAGTCTCTTAACAGCCCGGATTTTTCGTCCAATAATTACTACTCATCTGATCAGCCCACATTGGGTCCTAGAGCCAATAGGAGGTCCCCAAGTTTGCCTGAATTCCCTTTCAAAGTTTGCCATTACTTTATTAAGGGGTTTTGTAGACACGGAAGCAACTGTAGGTACTTGCATCCGACCCCTGAAACCTTCTCCCAAGTTTTTAGCCCGAGTTTGAGTGACGATGATCACATATTTTCACCTGGGTCTCTTGATAAACTAGAGTTAGAGCTCACTGAGCTCTTGAAATCCAGAAGAGGGTTCCCTGTGTCGATAGCTTCTTTACCAATGATATATTATGAAAAGTTCGGTAAGACACTTCAGGCTGAGGGATATTTAACCGAGAGCCAGAGACATGGCAAAGCTGGTTATAGTTTGACCAAGCTTCTGGCACGTCTTAAGAGCATTTGTCTCATTGATAGGCCTCATGGGCAACATGCAGTCATTCTGGCTGATGACTTAGCGAAATGCATTGATCATAACGGAGATAGAAATGAACATGGTGGCATTGTAGCCGGTTCTAGGCAGATATATTTGACTTTTCCAGCTGAGAGTACCTTCTCGGAGCGTGATGTTTTCAACTATTTCAGCAAATTTGGGCCTGTGCATGACGTGAGAATTCCTTGTCAGCAAAAGAGAATGTTTGGATTTGTGACTTTTATGTTTGCGGAAACCGTTAGGCATATTTTAAATAAGGGAAATCCTCATTTTGTTAGTGGTGCACGTGTTTTGGTCAAACCCTACCGCGAAAAGTGTAAGCTTGATGATAGGAAACATGGAGATACGTTTCATCATCACTGTTTTGATTCCGAATTTGGGCCTCATTCAATGCCCAAGACTGGTGATAATTCAAGGTTCATCAAGAAGCAGTTCGTTGATGAACAAGAGCAGGCATTTGAATTTGAGAGGAGACGTTTTTCAGATATGCATTTAGCAGCAGAGGTTAATAACCAATCTCAACGTTTTGGAACCTCACTCGAAGAGTTGATGCTATCAGAAGGCAATGTTCATGCACAACACATGGACTTCCCTTCGACCGAGCGTTTTAATCATCTTCTAGATGTTTTTAACAATGGTGCAACTAGTGAGGAAAAGATTAGGCAGATCAATACTAAATACAATGAGGAGGGTAGCCAGGGACTGAATCTTCCAGAAAGTCCATTTGCATCCGCATTAGGAACTGAAATATCACCAGTTATATAG 1680 42.02 MDFSESTKIVYDRIQKIEPENVSKIIGYLLLQDHGEREMIRLAFGPDNLIYSLINKAKTHLKLPSNTSAGQPLSPPNANSIPEMPIHFTPFSPSHRHSPLTIQVPTRCCDPHGQPVDYVPMVYPASYPEDYRLHNHLRFMSLEDQVESLNSPDFSSNNYYSSDQPTLGPRANRRSPSLPEFPFKVCHYFIKGFCRHGSNCRYLHPTPETFSQVFSPSLSDDDHIFSPGSLDKLELELTELLKSRRGFPVSIASLPMIYYEKFGKTLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVILADDLAKCIDHNGDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFSKFGPVHDVRIPCQQKRMFGFVTFMFAETVRHILNKGNPHFVSGARVLVKPYREKCKLDDRKHGDTFHHHCFDSEFGPHSMPKTGDNSRFIKKQFVDEQEQAFEFERRRFSDMHLAAEVNNQSQRFGTSLEELMLSEGNVHAQHMDFPSTERFNHLLDVFNNGATSEEKIRQINTKYNEEGSQGLNLPESPFASALGTEISPVI 559
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01451 559 SUPERFAMILY RNA-binding domain, RBD 346 422 IPR035979 GO:0003676(InterPro)
Enbr6g01451 559 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 341 412 - -
Enbr6g01451 559 ProSiteProfiles OST-type HTH domain profile. 229 312 IPR025605 -
Enbr6g01451 559 Pfam RNA recognition motif 346 393 IPR000504 GO:0003723(InterPro)
Enbr6g01451 559 Gene3D - 340 412 IPR012677 -
Enbr6g01451 559 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 409 IPR000504 GO:0003723(InterPro)
Enbr6g01451 559 Gene3D - 181 262 - -
Enbr6g01451 559 PANTHER RNA-BINDING (RRM-RBD-RNP MOTIFS) 1 551 - -
Enbr6g01451 559 SMART rrm1-1 335 405 IPR000504 GO:0003723(InterPro)
Enbr6g01451 559 MobiDBLite consensus disorder prediction 153 171 - -
Enbr6g01451 559 MobiDBLite consensus disorder prediction 153 173 - -
Enbr6g01451 559 SUPERFAMILY CCCH zinc finger 183 205 IPR036855 GO:0046872(InterPro)
Enbr6g01451 559 ProSiteProfiles Zinc finger C3H1-type profile. 180 207 IPR000571 GO:0046872(InterPro)
Enbr6g01451 559 CDD RRM-AtC3H46-like 336 405 IPR034365 -
Enbr6g01451 559 SMART c3hfinal6 182 206 IPR000571 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01451 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
87121 Enbr6g01451 Enbr8g02057
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr1:276998313 Enbr6g01451 Enbr-Chr6:49946241 dispersed
Enbr Enbr-Chr6:49946241 Enbr8g02057 Enbr-Chr8:69414947 dispersed