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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01455 ATGGCGGGGATACCCGTAGGAGAAAAACATCTTATGCAAGGCGCAATTGCTCAAGCTTTGCGTACTGATGGTCGTACGAGCTTAACTTACCGACCCATAACAGTCGAAGCTGGAGTCATTGCTCAAGCAAATGGTTCAGCAAGAGTTAAGATGGGTAGAACGGAAGTCATAGCTAGTGTAAAGGCCGAGCTAGGGAAACCAAGTTCTTCAGCACCCGACAAAGGCAAAGTTTTTTTCTATATTGATTGCAGTCCTACAGCAGCACCTGAGTTTGAGCGGAGAGGTGGTCAAGAACTGTCAACTGAACTCTCTGCAGCTCTCAGACGATGTCTTGTAAGAGGTAACGCTGTAGCAGGATCTGGAATTAATCTTTCATCTCTGTCAATCGTGGATGGGAAGGTCTGTTGGGATCTATATATTAATGGTCTTGTGATTAATATGGATGGGAATATACTTGATGCCTTAGGTGCTGCCATAGCTGCTTTTACCAATACACGTATTCCAAAAGTCAATGTTGTTGCGGCTGCCTCTTCTGATGAACAGCCAGTGGTGGACGTGAGTGATGAAGAGTTTCTACAATTCGACACCACTGAGGTTCCTGTTATTGTTACTTTTACTAAGGTCGGAAGGCATTATATTGTAGATGCAACTTCAGAAGAGGAATCACAAATGAGCTCTGATGTCTCTGTTTCAATTAACAGGCTAGGATTGATATGTGGGGTGAGTAAAAGAGGTGGAGGGGGTAAATGGTTAGATCCGAGTGTTGTTTTTGACATGATATCCGTGGCTACGAATTTGAGTGAGCAGATAATGAACAAATTGGACTCTGACATAGCTGCAGCCAAGGCCATGGAAGAAGACTCATGA 867 44.06 MAGIPVGEKHLMQGAIAQALRTDGRTSLTYRPITVEAGVIAQANGSARVKMGRTEVIASVKAELGKPSSSAPDKGKVFFYIDCSPTAAPEFERRGGQELSTELSAALRRCLVRGNAVAGSGINLSSLSIVDGKVCWDLYINGLVINMDGNILDALGAAIAAFTNTRIPKVNVVAAASSDEQPVVDVSDEEFLQFDTTEVPVIVTFTKVGRHYIVDATSEEESQMSSDVSVSINRLGLICGVSKRGGGGKWLDPSVVFDMISVATNLSEQIMNKLDSDIAAAKAMEEDS 288
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01455 288 SUPERFAMILY Ribonuclease PH domain 2-like 195 281 IPR036345 -
Enbr6g01455 288 CDD RNase-PH-RRP42 6 276 - -
Enbr6g01455 288 Pfam 3' exoribonuclease family, domain 1 30 168 IPR001247 -
Enbr6g01455 288 FunFam Exosome complex component RRP42 3 287 - -
Enbr6g01455 288 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 1 281 IPR050590 GO:0000176(PANTHER)|GO:0000177(PANTHER)|GO:0000467(PANTHER)|GO:0016075(PANTHER)|GO:0017091(PANTHER)|GO:0034427(PANTHER)|GO:0034473(PANTHER)|GO:0034475(PANTHER)|GO:0034476(PANTHER)|GO:0043928(PANTHER)|GO:0071028(PANTHER)|GO:0071035(PANTHER)|GO:0071038(PANTHER)|GO:0071042(PANTHER)
Enbr6g01455 288 Gene3D - 6 287 IPR027408 -
Enbr6g01455 288 Pfam 3' exoribonuclease family, domain 2 199 264 IPR015847 -
Enbr6g01455 288 SUPERFAMILY Ribosomal protein S5 domain 2-like 6 222 IPR020568 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01455 K12589 exosome complex component RRP42
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr3:128468951 Enbr6g01455 Enbr-Chr6:50088275 dispersed
Enbr Enbr-Chr6:50088275 Enbr9g01400 Enbr-Chr9:61927118 dispersed