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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01475 ATGGCTCCAGCTTTAGCAGCAGATAAAATCAAGCCTAGAGATGTGTGTATCGTTGGTGTTGCACGAACACCGCTTGGTGGCTTTCTTGGTTCTCTTTCGTCTTTACCAGCCACTAAACTTGGGTCTTTAGCAATTGAATGTGCTCTAAAAAGGGCGAATGTTGATCCATCACTTGTAGAAGAGGTCTACTTCGGAAATGTTCTTGGTGCCAATTTGGGGCAGGGTCCTGCCAGACAAGCGGCATTAGGTGCAGGAATTCCAAATACAGTTGTCTCTACATCTGTTAATAAAGTTTGTGCATCAGGGATGAAAGCGACCATGTTGGCAGCACAGAGTATTCAGTTGGGTCAAAATGATATAGTTGTGGCTGGTGGAATGGAAAGCATGTCTAATGTCCCCAAATACATTGCAGAATCAAGAAAGGGATCTAAGTTTGGACATGATAGTCTTGTTGATGGAATCCTGAAAGATGGGCTGTGGGACGTTTTCAATGATTTTAAGATGGGAAACTGTGCTGAAATATGTGCAGATACACATGGAGTTACAAGGGAACAGCAGGATGACTATGCGATTCAAAGCTTTGAGCGTGCTATTGCTGCCAGAGATAGTGGTGCATTTGCATGGGAAATTGCCCCTGTTGAAGTTCCTGGACCAAGAGGAAGACCATCGACTATTGTTGACAAAGATGATGACTTAGCAAAGTTCGATGCTGCAAAGTTAAGGAAGCTGCGCCCGGCTTTCAAGGAGAATGGTGGCAGTGTTACTGCTGGCAATTCATCTGGTATAAATGATGGTGCTGCTGCACTAGTGTTGGTTAGTGGCGAGAAGGCGCTTCAGCTTGGGTTGCATGTGATAGCAAAGGTTTCCGGATATGCTGATGCTGAACAGGCACCCGAGTTATTTACAACTACCCCAGCTCTTGCTATTCCCAAGGCTATTTCACGAGCTGGATTAGATGCTTCCGAAATAGATTTCTATGAAATTAATGAAGCATTTGCTGTTGTTGCTCTTGCAAACCAGAAACTGCTTGGTTTGGATGCTGCGAAACTTAATGTACATGGTGGTGGTGTCTCATTGGGGCATCCTCTGGGTTGCAGTGGTGCCCGTATCTTGGTCACTCTTTTGGGGGTTTTGAAGCAGAAAGGTGGCAAATACGGCGCAGCAGGGGTGTGCAATGGAGGAGGTGGTGCATCAGCGTTTGTGGTTGAGCTACTTTAG 1218 45.73 MAPALAADKIKPRDVCIVGVARTPLGGFLGSLSSLPATKLGSLAIECALKRANVDPSLVEEVYFGNVLGANLGQGPARQAALGAGIPNTVVSTSVNKVCASGMKATMLAAQSIQLGQNDIVVAGGMESMSNVPKYIAESRKGSKFGHDSLVDGILKDGLWDVFNDFKMGNCAEICADTHGVTREQQDDYAIQSFERAIAARDSGAFAWEIAPVEVPGPRGRPSTIVDKDDDLAKFDAAKLRKLRPAFKENGGSVTAGNSSGINDGAAALVLVSGEKALQLGLHVIAKVSGYADAEQAPELFTTTPALAIPKAISRAGLDASEIDFYEINEAFAVVALANQKLLGLDAAKLNVHGGGVSLGHPLGCSGARILVTLLGVLKQKGGKYGAAGVCNGGGGASAFVVELL 405
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01475 405 Gene3D - 11 404 IPR016039 GO:0016746(InterPro)
Enbr6g01475 405 ProSitePatterns Thiolases signature 2. 351 367 IPR020613 GO:0016747(InterPro)
Enbr6g01475 405 CDD thiolase 17 403 IPR002155 GO:0016747(InterPro)
Enbr6g01475 405 PANTHER ACETYL-COA C-ACYLTRANSFERASE 14 404 - GO:0003985(PANTHER)|GO:0005739(PANTHER)|GO:0006635(PANTHER)
Enbr6g01475 405 SUPERFAMILY Thiolase-like 14 282 IPR016039 GO:0016746(InterPro)
Enbr6g01475 405 SUPERFAMILY Thiolase-like 285 404 IPR016039 GO:0016746(InterPro)
Enbr6g01475 405 Pfam Thiolase, C-terminal domain 283 403 IPR020617 GO:0016747(InterPro)
Enbr6g01475 405 PIRSF Ac-CoA-Ac-transf 9 405 IPR002155 GO:0016747(InterPro)
Enbr6g01475 405 FunFam acetyl-CoA acetyltransferase, mitochondrial 10 405 - -
Enbr6g01475 405 Pfam Thiolase, N-terminal domain 15 274 IPR020616 GO:0016747(InterPro)
Enbr6g01475 405 ProSitePatterns Thiolases active site. 386 399 IPR020610 GO:0016747(InterPro)
Enbr6g01475 405 NCBIfam acetyl-CoA C-acyltransferase 17 403 IPR002155 GO:0016747(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01475 K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr1:162099292 Enbr6g01475 Enbr-Chr6:50791939 dispersed
Enbr Enbr-Chr5:4600404 Enbr6g01475 Enbr-Chr6:50791939 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Enbr6g01475 . 1 405 AACT gene family AT5G47720 75.802 0.0 647.0
Enbr1g05392 . 10 405 AACT gene family AT5G47720 78.03 0.0 645.0