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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01612 ATGAGCAGCAGTATTGATATGAAATCCAAATTCATGCAAGTTTATGAAACTCTAAAATTTGAGCTAATTCATGATCCTGCTTTTGAGTTTGATCATGATTCTCGTCATTGGGTTGACCAGATGCTTGACTACAATGTACCTAGAGGAAAGCTGAATAGAGGCCTCTCTGTTGTCGACAGCTATAAGTTACTTAAAGGAGAAGAACTGACGGAAGAAGAAATTTTTCTTTCATGTGCCCTTGGTTGGTGCATTGAATGGCTTCAAGCATATTTTCTTGTACTTGACGACATTATGGATGAATCTCATACTCGTAGAGGTCAACCCTGTTGGTTCAGATTACCGAAGGTTGGTATGATCGCTATCAATGATGGAGTTATTCTTCGCAATCATATTCCTAGAATCCTAAAGAAACATTTCCGGGGGAAGCCTTACTATGTGGATCTATTGGACCTCTTCAACGAGGTAGAATTCCAAACAACTTCTGGACAGATGATAGATTTGATTACTACACTTGCTGGAGAGAAAGATCTCTCTAAGTATTCTTTGTCGATTCACCGCCGGATTGCTCAGTACAAAACTGCCTATTATTCATTTTACATTCCAGTTGCGTGTGCACTCCTTATGTTTGGAGAGAATCTCGATGATCATGTTCAAGTGAAAGACGTCCTTGTTGAAATGGGTACCTATTTTCAAGTGCAGGATGATTATCTTGATTGCTTTGGTGCTCCTGAGGTGATTGGCAAGATTGGAACAGATATTGAAGACTTCAAGTGTTCATGGTTGGTCGTAAAAGCGTTAGAACTTTCCAATGAGGAACAAAAGAAACTTCTGCATGAGAACTATGGTAGAAAGGATCCAACTAGCGTAGTAAAAGTGAAAGAACTTTACCACACTCTTAACCTTCAGGCTGTTTTTGAAGACTACGAGAACACAAGTCATGAAAAGTTGGTCAAATCGATTGAAGCTCACCCAAGCAAAGCAGTACAAGCTGTGTTAGAATCTTTCTTGAGAAAGATATATAAGAGGCAAAAGTAG 1035 39.23 MSSSIDMKSKFMQVYETLKFELIHDPAFEFDHDSRHWVDQMLDYNVPRGKLNRGLSVVDSYKLLKGEELTEEEIFLSCALGWCIEWLQAYFLVLDDIMDESHTRRGQPCWFRLPKVGMIAINDGVILRNHIPRILKKHFRGKPYYVDLLDLFNEVEFQTTSGQMIDLITTLAGEKDLSKYSLSIHRRIAQYKTAYYSFYIPVACALLMFGENLDDHVQVKDVLVEMGTYFQVQDDYLDCFGAPEVIGKIGTDIEDFKCSWLVVKALELSNEEQKKLLHENYGRKDPTSVVKVKELYHTLNLQAVFEDYENTSHEKLVKSIEAHPSKAVQAVLESFLRKIYKRQK 344
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01612 344 SFLD Isoprenoid Synthase Type I 10 342 - -
Enbr6g01612 344 ProSitePatterns Polyprenyl synthases signature 1. 92 106 IPR033749 -
Enbr6g01612 344 SFLD Polyprenyl Transferase Like 10 342 - -
Enbr6g01612 344 SUPERFAMILY Terpenoid synthases 25 343 IPR008949 -
Enbr6g01612 344 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 7 344 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
Enbr6g01612 344 Gene3D Farnesyl Diphosphate Synthase 2 343 IPR008949 -
Enbr6g01612 344 FunFam Farnesyl pyrophosphate synthase 1 343 - -
Enbr6g01612 344 CDD Trans-IPPS-HT 37 342 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Enbr6g01612 344 Pfam Polyprenyl synthetase 36 298 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Enbr6g01612 344 ProSitePatterns Polyprenyl synthases signature 2. 226 238 IPR033749 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01612 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:56054730 Enbr9g02086 Enbr-Chr9:84265255 dispersed
Enbr Enbr-Chr6:56054730 Enbr6g01613 Enbr-Chr6:56106696 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Enbr9g01124 . 314 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 70.423 3.69e-27 103.0
Enbr6g01613 . 46 317 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 54.044 4.56e-97 286.0
Enbr6g01612 . 41 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 75.0 0.0 549.0
Enbr9g02086 . 37 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 75.575 0.0 551.0
Enbr9g02084 . 37 120 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 76.19 1.52e-39 132.0