AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g01879 ATGGATATCCCTCCGCCGCCGCTTGCCGCAGACGGCGGAGCTAAAACCGCACCGGATTCTTCATCAGATAATGAAGAAGAAGATATTTGCCGTATATGCCGCAATCCAGGAGACGCCGATAATCCGCTGCGGTATCCGTGTGCTTGTAGCGGAAGTATAAAGTTTGTTCATCAGGATTGTCTTCTTCAATGGCTCAATCTCCGCAACGCTCGTCACTGCGAGGTTTGCAAACACCCCTTTTCGTTCTCTCATGTGTATACTAATAATGCCCCAGCAAGGCTTCGTTTTTGGGAAATTGTTGTTGGTATGGAAATGAAATACCATGATATGGTGCAGTGGTTCATGCGTCTTAGTTTTGAGCTTTCCATGTGGTTTTTGATCATACCATTTATTACTTTCTGGACATGGAGTTTCTCATTTGCAAGGAGCTTTGGCGCAGCCAGAAGACTGTTCTTGAGTCGCATCTCAACTACATCCATTCTTACTGATTGTGCTCGTGGGTTCCTTCTTTCTATAAGCATCGCATTTATTACCTTGGCTGTGTGGTGTTTGAGGGACTATATTATATATCTACGAGAACATAGAGGACTGGAAAGGGAAAGAGAGGATGACGGTGATGGAAATGGTGCTCATGTTGGAGGGATTCAACGTGATCAAACAGACCAAAACCTTCTTGGTGAAGGGAATGGTGGAGATGTTGGGGCACAGGGTATTGGCAGGGCTGCTCAGATTTTCATAAGGAATGCAGAGTATATTGCAGAATTTGACTGGTTAGATGGCATGCAATTTGATATGGTAGAAACTACTTATAATGTTCTTGCACGCAACATTATATTTCTTGGCTTTGTAGCTTTTGTGCCTTTCCACCTAGGACGATTTATCTTCTACAATCTATCATGGATTTTATCGTCTGCCACCAGCCCAATGGTGTTGACTGTTGCACCGCATACTGAGCAAACACTTTCCTTGGTCAATATTACATCAGGGAATGCATTGACTGCACTCACAAATTTGACTTCTGAGAAAAATGTTGGAGAAGTGATGAATGTTATTGATTTTAGACTTGATGGATCACAAAACAATGTTGCAAGTCGTGTTTCAATTGACTTTCTTAAAGGGGGAATTACTGGAGCATCCAGACTCTCTGATGCTGCAACTGTTGCAGTTGGATACATGTTCATTTTTGCAGTAGCTATTATCTGCCATGGGGTAGTTGCCCTGGTTAGGTACAGCAGGGCGGAGCCTCTGGTCATGGGAAGGTTCTGTAGCACATCAGTTGTAGATAATATCTCTTCACTTTTCAGGCTGATGTTTGGCAAGTCAATTGCTCAAAGAGTTGAATTCTTTTCGGTATCTCCATTGGCAAGCTCATTGATTCACTGGGTTGTAGGAATTGCCTACTTATTACAACTATTCATATTCGCCAATCTTCTTCGAGAGATTCTGCGCTATGGAGTTCTTTATTTCTTGCGAGATCCTGCTGATCCTAATATAAATCCATTCAGGGATGTTGATCCTATGCGTAGACAGCGTGGTTATGCTCTCAATATTCTGTTTTCAGCTGCTTTTCACGGGAGCATAATCGTACTACTGGTATTTTTGCCAGTTAAACTTGCTATGTGGATAGCTCCTTCAGTCTTTCCTCTGGATATATCTTCTTCCATATTTTCATTTGCTGTTGAGCATTTTAAGATGCATGCAACAATCAAGTCGCTTATGCACTATTGGTTTACTGCGGTTGGTTGGGCTCTTGGTTTAACAGATTACTTACTGGCCAGACCTGAGGACGGTGGGCAAGTAAATGGAAATGATCTAGGAAGGCGAGACAGGATACGTGCTCAACTAGGGGACGAAGATCAAGCTGTAGTAGGAGATTTGGCCTCTGAATATTTGAAACAAGAAGGGTACACAACAGCCAATGCTAATTCTGCAGAAGATGCCGATGGCGATGAACTCTCTGATTCAGAGAGATATGCGTTTGTTCGAGGTATAGTGCTTCTTTTATTGATGGCTTGGATGACATTGTTGATCGTCATTTCTGCTTCAATTGTGGTGCCCTTATCCATTGGACGAGTGTTGTTGAATGCTGTTCCCTTTCTCCCTATCAGTCATGGCACCAACTGCAAGGACATATATGCATTTGGTATTGGAAGTTATGTCATCTGGACCGCCCTTGCTGGAATAAGGTATTGTGTTGATCTAATTAGAACAAGGAGAGATTCAATGCTGCTAACTCAAATATGGAAATGGTTTTCCACAGTTGTGAAGAGCTTTGTATTGTTGTTAATTTGGCATTTTTTTATCCCGGTGTTGATTGGACTGCTATTTGATCTTTTGGTATTTCTACTAATGTTGGTGCCTGTGGATGAAAGCCCGGTATTCGTGCTGTATGACAATTGGGTGCTTGGACTTAGTATCTTCAAGCTCTGGATTTGGCTGATACTGCTCGGTTTTACGATACGTCTTATGGATGATAGCTGGCAAGTAAAGTTTGAGACGGTAATGAGAGTTGGCTTCTCAAGGCTGCCAGCTCGTTGGGTGTTACGAGAGATCATGGCCCCCATCATGATGAAGCTTCTTACAGCTCTATGTGTCCCTTATATACTAGCCCGCGGAGTATTTCCTCTATTTGGGTACGGTTCAGTGGTTAACTCGGTTGTCTATAGGTTTGCATGGCTGGGGTACCTTGGTCCGAGTTTATTGTGCTTTTGTGCCAAGAGGTTACATTTCTGGTTCACCGACCTCCACAACTCAATAAGAGATGACCACTATTTGATTGGCCGGGGACTTCATAACTTTGGGGAAGCTTAA 2811 43.05 MDIPPPPLAADGGAKTAPDSSSDNEEEDICRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNLRNARHCEVCKHPFSFSHVYTNNAPARLRFWEIVVGMEMKYHDMVQWFMRLSFELSMWFLIIPFITFWTWSFSFARSFGAARRLFLSRISTTSILTDCARGFLLSISIAFITLAVWCLRDYIIYLREHRGLEREREDDGDGNGAHVGGIQRDQTDQNLLGEGNGGDVGAQGIGRAAQIFIRNAEYIAEFDWLDGMQFDMVETTYNVLARNIIFLGFVAFVPFHLGRFIFYNLSWILSSATSPMVLTVAPHTEQTLSLVNITSGNALTALTNLTSEKNVGEVMNVIDFRLDGSQNNVASRVSIDFLKGGITGASRLSDAATVAVGYMFIFAVAIICHGVVALVRYSRAEPLVMGRFCSTSVVDNISSLFRLMFGKSIAQRVEFFSVSPLASSLIHWVVGIAYLLQLFIFANLLREILRYGVLYFLRDPADPNINPFRDVDPMRRQRGYALNILFSAAFHGSIIVLLVFLPVKLAMWIAPSVFPLDISSSIFSFAVEHFKMHATIKSLMHYWFTAVGWALGLTDYLLARPEDGGQVNGNDLGRRDRIRAQLGDEDQAVVGDLASEYLKQEGYTTANANSAEDADGDELSDSERYAFVRGIVLLLLMAWMTLLIVISASIVVPLSIGRVLLNAVPFLPISHGTNCKDIYAFGIGSYVIWTALAGIRYCVDLIRTRRDSMLLTQIWKWFSTVVKSFVLLLIWHFFIPVLIGLLFDLLVFLLMLVPVDESPVFVLYDNWVLGLSIFKLWIWLILLGFTIRLMDDSWQVKFETVMRVGFSRLPARWVLREIMAPIMMKLLTALCVPYILARGVFPLFGYGSVVNSVVYRFAWLGYLGPSLLCFCAKRLHFWFTDLHNSIRDDHYLIGRGLHNFGEA 936
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g01879 936 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 14 90 IPR013083 -
Enbr6g01879 936 ProSiteProfiles Zinc finger RING-CH-type profile. 22 83 IPR011016 GO:0008270(InterPro)
Enbr6g01879 936 CDD RING-CH-C4HC3-MARCH6 29 78 - -
Enbr6g01879 936 FunFam Probable E3 ubiquitin ligase SUD1 15 88 - -
Enbr6g01879 936 SMART ringv-2 29 77 IPR011016 GO:0008270(InterPro)
Enbr6g01879 936 SUPERFAMILY RING-U-box 24 81 - -
Enbr6g01879 936 Pfam RING-variant domain 30 76 IPR011016 GO:0008270(InterPro)
Enbr6g01879 936 PANTHER SSM4 PROTEIN 15 935 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Enbr6g01879 936 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g01879 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:66046116 Enbr6g01883 Enbr-Chr6:66122743 dispersed
Enbr Enbr-Chr6:66036152 Enbr6g01879 Enbr-Chr6:66046116 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Enbr1g00320 ACH 37 141 HMGR gene family AT4G34100 32.71 1.88e-11 62.4
Enbr5g02420 . 68 135 HMGR gene family AT4G34100 36.232 1.24e-09 55.8
Enbr4g01859 ACH 39 142 HMGR gene family AT4G34100 30.769 3.00e-10 58.9
Enbr2g01407 . 51 633 HMGR gene family AT1G76490 71.525 0.0 856.0
Enbr3g03677 . 68 118 HMGR gene family AT4G34100 43.137 4.14e-11 58.2
Enbr9g00132 . 51 632 HMGR gene family AT1G76490 70.27 0.0 842.0
Enbr7g01984 . 68 129 HMGR gene family AT4G34100 40.323 1.59e-09 56.2
Enbr6g01884 ACH 67 1104 HMGR gene family AT4G34100 72.073 0.0 1486.0
Enbr6g01883 . 67 1068 HMGR gene family AT4G34100 57.597 0.0 1060.0
Enbr2g00630 . 68 127 HMGR gene family AT4G34100 41.667 8.60e-10 55.5
Enbr1g04459 . 53 632 HMGR gene family AT1G76490 71.429 0.0 842.0
Enbr4g01025 ACH 67 1080 HMGR gene family AT4G34100 72.2 0.0 1494.0
Enbr6g01879 . 67 1068 HMGR gene family AT4G34100 53.419 0.0 975.0
Enbr6g01878 . 67 1068 HMGR gene family AT4G34100 56.046 0.0 1037.0
Enbr4g03951 . 96 632 HMGR gene family AT1G76490 67.883 0.0 759.0
Enbr4g03950 . 96 632 HMGR gene family AT1G76490 67.883 0.0 759.0
Enbr1g00385 . 38 129 HMGR gene family AT4G34100 32.632 8.57e-09 54.3
Enbr2g03575 . 38 129 HMGR gene family AT4G34100 32.632 5.89e-08 54.7
Enbr7g03615 . 35 124 HMGR gene family AT4G34100 35.556 1.07e-10 57.4
Enbr7g01995 . 68 129 HMGR gene family AT4G34100 40.323 1.59e-09 56.2