AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g02207 ATGTGGTCACCAGATAGTAGTTCATCACCACCGGAAAAGATTATATATACATACGGCGTGGAGATCATCGGAAAAGATGAATCGGCGGGGGATGAAGGAGGCATGATGGAAGATTCGGTCAGAGCTGTAGAAAGAATACTGAAATATAAATTCGCAAAAAAAGAATTGTTAGAACAAGCCCTGACGCATTCTTCTTCAAGTAATAATAGTTATGAAAGGCTTGAGTTTATGGGGGATGCCGCCCTTGGTCTCGCTATTTCCAACATGTTTTACTTGACTTACCCGGATCTTGACCCTGGTCAACTCTCCCTCCTTCGTGCTGCTAATCTTAGTACTGAAAAACTCGCACGTGTTGCAGTTAAACATCACTTTTATAAGTACATCAAACATAATGCAATTGATGTTCTCAATCATATGGTATGGGATTTTGTCAAAGTGGTTCAAGAAGAAGAAGACAGGATGGTGGTGCACGGTGGGCAAATGAAAGCACCCAAAGTTCTTGCCGATATTGTTGAATCAATCGCTGGAGCGATATACGAAGATTGCGGATGGGACTTGAAATACATGTGGAAGGTAATGAGAGAGTTACTTGAACCGTTAGTGATGTTAAAAGTCCTGGAGAAACAACCACAACCTATTACAATGCTCTTTGAGTTGTGTAACAAGGATGGGAAGCAAGTTGAAATAAAACACGAGAAGAACGGTGACAAAATCATCGCCACTGTGTATGTGAATGGAGGGTCTGTTGCCTCTGCCTCTTCAGATAATAAAGCGAATGCAAAACTTCATGCTGCCGAGGCCGCATTGTGTATATTAACGCAGCCAAATACCAACGAACATATTTATGGTGATTATAATGAAGACACTGAGATTGAAGGCGCCAAGCAAAAAATATATGAACTTTGCAACAAAAGAAAGTGGCCAAAGCCGAGTTACAGGGTTGAACAAGAGGGTCCTGCGCATGCTAGAATATTCATATCATCTGTGCAAATTCATGCTTCCGATGGTGAACTTCTAGTGCAGGGTAATAAGAGGTCTAAAGTAAAAGATGCAGAGAACTCTGCTGCTTCGAAGATGTACTATGGTTTGCAAAAATCTGGATATATATGA 1110 41.17 MWSPDSSSSPPEKIIYTYGVEIIGKDESAGDEGGMMEDSVRAVERILKYKFAKKELLEQALTHSSSSNNSYERLEFMGDAALGLAISNMFYLTYPDLDPGQLSLLRAANLSTEKLARVAVKHHFYKYIKHNAIDVLNHMVWDFVKVVQEEEDRMVVHGGQMKAPKVLADIVESIAGAIYEDCGWDLKYMWKVMRELLEPLVMLKVLEKQPQPITMLFELCNKDGKQVEIKHEKNGDKIIATVYVNGGSVASASSDNKANAKLHAAEAALCILTQPNTNEHIYGDYNEDTEIEGAKQKIYELCNKRKWPKPSYRVEQEGPAHARIFISSVQIHASDGELLVQGNKRSKVKDAENSAASKMYYGLQKSGYI 369
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g02207 369 SUPERFAMILY dsRNA-binding domain-like 280 364 - -
Enbr6g02207 369 FunFam Endoribonuclease dicer-like 1 35 204 - -
Enbr6g02207 369 Gene3D - 300 366 - -
Enbr6g02207 369 SMART riboneu5 55 206 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g02207 369 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 293 365 IPR014720 -
Enbr6g02207 369 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 211 274 IPR014720 -
Enbr6g02207 369 Gene3D Ribonuclease III domain 31 203 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g02207 369 SUPERFAMILY RNase III domain-like 37 201 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g02207 369 SUPERFAMILY dsRNA-binding domain-like 165 275 - -
Enbr6g02207 369 Gene3D - 204 279 - -
Enbr6g02207 369 SMART DRBM-3 212 273 IPR014720 -
Enbr6g02207 369 SMART DRBM-3 294 364 IPR014720 -
Enbr6g02207 369 Pfam Double-stranded RNA binding motif 294 360 IPR014720 -
Enbr6g02207 369 Pfam Double-stranded RNA binding motif 212 272 IPR014720 -
Enbr6g02207 369 PANTHER DICER-RELATED 35 329 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Enbr6g02207 369 Pfam Ribonuclease III domain 72 183 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g02207 369 CDD DSRM-SF 299 360 - -
Enbr6g02207 369 CDD RIBOc 55 201 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Enbr6g02207 369 ProSiteProfiles Ribonuclease III family domain profile. 40 183 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g02207 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr5:94894081 Enbr6g02207 Enbr-Chr6:78519035 dispersed
Enbr Enbr-Chr6:78519035 Enbr6g01353 Enbr-Chr6:46984544 transposed