AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g02994 ATGTTTACTAGTTTCACACCCTTTGGAGGCATGAAATCAAAAATCGTTCCTTACTATATGAACGGAACTCCATCTAGCCTTTTTTGCATCCTGCCACGAGACGATTCTTCACGTTTTTACCCTCCTGGTACCGTTCCTGTTTACCTTAATGTGTATGACATCTCTACTATCAATAATTGTATATCATGGACAGGTCTGGGTGCCTTTCACACCGGTTTAGAAGTTCATGGCGTGGAATATGGTTTTGGATGTCACCAAGAATCAGAAAGTGGTGTCTTTGAAATTGAGCCTCGGAAATGTCCTGGTTTCAAGTTTAGGGAGTCGATTTTTATGGGTACAACAAAGCTAACTTCGAGTCAGGTTCATAGATTCTTTGAGCTGCAGTCTAATAACTACTATGGTGACACATACCACTTATTTGGGAAGAACTGCAACCATTTTTGTGAAGATATGTGTTACCAGTTAACCAGGAACAAAATCCCCAAATGGGTCAACCGGCTTGCCAGACTAGGTTCATGTTGTCGATGCATACTCCCAAAATCCATCAAGGGTTCTGCTGTTAAAAACGAATCAAATGTTTCAGACTATGAAAAGAAGAGTTTGAAAAGTTCATTTAGCTGCTTTTCATCATTTTCGTCACATAATAAGTTGAGGAAAGTGTCGATATCTTCATTGTATAAGCATTCCCTCTACAAAGGATGTCTTCCCCCATGGGAGTTGCGTGTAGACTCACAAAGGCTTTGTGATGAGGATGATGAGTGA 762 40.42 MFTSFTPFGGMKSKIVPYYMNGTPSSLFCILPRDDSSRFYPPGTVPVYLNVYDISTINNCISWTGLGAFHTGLEVHGVEYGFGCHQESESGVFEIEPRKCPGFKFRESIFMGTTKLTSSQVHRFFELQSNNYYGDTYHLFGKNCNHFCEDMCYQLTRNKIPKWVNRLARLGSCCRCILPKSIKGSAVKNESNVSDYEKKSLKSSFSCFSSFSSHNKLRKVSISSLYKHSLYKGCLPPWELRVDSQRLCDEDDE 253
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g02994 253 Gene3D PPPDE domains 41 199 IPR042266 -
Enbr6g02994 253 PANTHER DESUMOYLATING ISOPEPTIDASE 44 207 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Enbr6g02994 253 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Enbr6g02994 253 Pfam PPPDE putative peptidase domain 46 180 IPR008580 GO:0008233(InterPro)
Enbr6g02994 253 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g02994 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:110028340 Enbr9g00703 Enbr-Chr9:33099161 dispersed
Enbr Enbr-Chr6:110028340 Enbr2g03018 Enbr-Chr2:97804246 transposed