AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Enbr6g03228 | ATGGGCTCTCAAGCGGCGGCGGACGTTGAGTGGCCGGCGAATAAAGTTAGAAAAACGTTTATAGAGTTTTTTGAACAGAGGAATCATGTGTATTGGAAATCTAGTCCTGTTGTTCCTGTTAATGATCCTACGCTTTTATTCGCTAATGCCGGTATGAATCAGTATAAGCCGATTTTCTTGGGTACTGCCGACCCAAACACTCAATTGAGCAAACTCACCCGTGCCTGCAATACACAGAAGTGTATCCGGGCAGGTGGGAAACATAATGATCTTGATGATGTTGGTAAAGACACTTATCATCACACCTTCTTTGAGATGTTGGGTAACTGGTCGTTTGGTGATTATTTTAAAGAGGAAGCCATTGGATGGGCATGGGAGCTTCTCACAACGGTTTATAAGCTACCCTCTGATCGAATATATGCTACTTATTTTGGTGGTGACGAGAAATTGGGCCTTCCTGCTGATAGCGAAGCTAAAAATATATGGCTAAAGTATCTGCCTCCTGCACGAGTTTTGCCATTTGGTTGTAAAGATAACTTTTGGGAAATGGGTGATACTGGACCTTGTGGACCCTGCACTGAAATACATTTTGATAGAATTGGTGGTCGTGAGGCCGCAGAGTTGGTAAACAATGATGACCCTACTTTGATCGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCTGATGGCTCCTTAAAACCGTTGCCTGCTCAACATGTGGATACTGGCATGGGTTTTGAAAGATTGACTTCAATTCTTCAGAACAAGATGAGCAACTACGATACTGATGTGTTTATGCCTATTTTTGATGCTATGCAGCAGGCAACTGGTGCTAGGCCATATTCAGGCAAAGTGGGTCCAGATGATGTAGACGGAATTGATATGGCTTATAGAGTTGTTGCTGACCATATTAGAACTCTTTCATTTGCTATTGCAGACGGTTCTCGTCCAGGCAATGAAGGGCGTGAGTATGTTCTGCGACGCATTCTTAGGCGAGCCGTACGCTATGGAACAGAAGTATTGAAAGCGCAGCAAGGATTCTTCAACGGATTAGTGAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCTGAGCTAAAAGCACAAGAGGAACATATTAGAGAGGTCATAGCAGACGAGGAAGCAAGTTTTGGGAGGACATTACTTCATGGAATTGAGAAGTTTAAGAGGACTGCTCAAGATGTTAAGGGAAAGTCATTCAGTGGACAGGATGCATTTGTGCTGTGGGATACCTATGGATTTCCATTGGATTTGACTCAGTTAATGGCAGAAGAAAGAGGGCTTGTGGTTGATGTTGAGGGTTTTAATCGTGCTATGGATGAAGCAAGAGAAAAGTCCAGGAATGCCCAGAATAAGGGTAACGCTGGTGCGATTGTCATGGATGCAGAAGCTACTTCAGTACTGCATAATAGAGGCGTGGCTACAACAAACGATAGTTTTAAGTATACATGGTTTGAGGACCACGAAAGTGTGATAAAAGCGATTTACACGGGCCGTGAATATGTTGAACATGTTGATGCTGGCGTTGATGTTGGTATAATTCTTGAGAGCACAAGTTTCTATGCCGAGCAAGGTGGTCAGATATTTGATATTGGACTACTTGAAGGCCCTCTTGGACCGTTTGTAGTGAGCAACGTTCAAGTTTATGGTGGTTTTGTGATACATCTGGGTAAAGTTACTGGGTCTGCCAAGTTTCATGTTGGTGATGAAGTTATATGCAAGGTCGATTATGTAAGACGTCAGCGGATTGCTCCGAACCACACCTGTACACACATGTTAAATTTTGCACTCAGGGAAGTACTCGGAACTCATGTTAACCAGAAAGGATCCATTGTTCTTCCAGAAAAACTAAGATATGACTTCTCCCATGGGAAGCCTGTAAAGCCGGAGGAACTTCTCAGAATTGAATCTATTGTGAATGAACAAATTAAAGCTGAGTTAGATGTTTCTGCGAAGGAGGCAAGCCTTGCTGATGCAATGCGAATAAATGGATTACGAGCTGTTTTTGGTGAAGTGTATCCTGATCCGGTTAGGATTGTTGCAATTGGTCAACAAGTTGATGATCTCCTTGCCGATCCTGAAGATAAAAAATGGTTATCCATATCTGCAGAGCTCTGTGGAGGGACCCACATTTCAAATACAAGAGAGGCGAAGGCATTTGCACTTTTGTCCGAGGAGGGAATTGCTAAGGGGATTCGTAGAGTTACTGCTGTAACGACAGATCATGCTTTTGAGGCTATGAAAAAGGCTCAGGAACTTGAGCAGGAGGTTGACCTGGCATCGAAACTAGAAGGAAGCCTTCTTAAGGAGAAAGAGAAATCGTTAAAAAGTCAAGTAGACTCCGCTGCTATTCCAACCGCAAGAAAGGCCGATCTTAAGGCAAAAGTGCTTAAACTTTCGGATCAAGTAACAAAAGCAAAAAAGAAAACTGAAGAGGAGAACATACGTAAAGCTGTTGAAGCTGCCACTGAATCAGCAGAAGCTGCCGCTTCTGAGGGCAAGGCTTTTTGCATTACACATGTTGGAGTAGGATCGGATGCTGCTGCTATTCGTGATGCAGTTGTTAAAGTCATGGAGCAGAGGGGAATGGCAGTGATGGTTATCAGCACTGATGAACAATCGAAGAAGGCCTTAGTTTGCGCAGGGGTGCCAGTCAATGGCGATCAAAGCAATCACTTGAAGGTTAAAGATTGGCTGGATGCGGCACTTAACCCTCTAAAAGGCAAAGGTGGTGGTGGGAAAGGCGGTCTTGCTGCAGGCCAGGGACCCGGCATAGATCATGTAGATGAAGCAATTGACGTTGCTAAATCATTTGCAGCACTGAAACTGGGCTGA | 2865 | 43.8 | MGSQAAADVEWPANKVRKTFIEFFEQRNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVYKLPSDRIYATYFGGDEKLGLPADSEAKNIWLKYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGREAAELVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAQHVDTGMGFERLTSILQNKMSNYDTDVFMPIFDAMQQATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKAQEEHIREVIADEEASFGRTLLHGIEKFKRTAQDVKGKSFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNRAMDEAREKSRNAQNKGNAGAIVMDAEATSVLHNRGVATTNDSFKYTWFEDHESVIKAIYTGREYVEHVDAGVDVGIILESTSFYAEQGGQIFDIGLLEGPLGPFVVSNVQVYGGFVIHLGKVTGSAKFHVGDEVICKVDYVRRQRIAPNHTCTHMLNFALREVLGTHVNQKGSIVLPEKLRYDFSHGKPVKPEELLRIESIVNEQIKAELDVSAKEASLADAMRINGLRAVFGEVYPDPVRIVAIGQQVDDLLADPEDKKWLSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDHAFEAMKKAQELEQEVDLASKLEGSLLKEKEKSLKSQVDSAAIPTARKADLKAKVLKLSDQVTKAKKKTEEENIRKAVEAATESAEAAASEGKAFCITHVGVGSDAAAIRDAVVKVMEQRGMAVMVISTDEQSKKALVCAGVPVNGDQSNHLKVKDWLDAALNPLKGKGGGGKGGLAAGQGPGIDHVDEAIDVAKSFAALKLG | 954 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Enbr6g03228 | 954 | FunFam | Alanine--tRNA ligase | 485 | 584 | - | - | |
| Enbr6g03228 | 954 | Gene3D | - | 586 | 763 | - | - | |
| Enbr6g03228 | 954 | ProSiteProfiles | Alanyl-transfer RNA synthetases family profile. | 11 | 759 | IPR018165 | GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro) | |
| Enbr6g03228 | 954 | Pfam | tRNA synthetases class II (A) | 15 | 587 | IPR018164 | GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro) | |
| Enbr6g03228 | 954 | SUPERFAMILY | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 264 | 463 | IPR018162 | GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro) | |
| Enbr6g03228 | 954 | Coils | Coil | 442 | 462 | - | - | |
| Enbr6g03228 | 954 | FunFam | Alanine--tRNA ligase, cytoplasmic | 10 | 260 | - | - | |
| Enbr6g03228 | 954 | PRINTS | Alanyl-tRNA synthetase signature | 301 | 317 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Enbr6g03228 | 954 | PRINTS | Alanyl-tRNA synthetase signature | 325 | 338 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Enbr6g03228 | 954 | PRINTS | Alanyl-tRNA synthetase signature | 217 | 228 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Enbr6g03228 | 954 | PRINTS | Alanyl-tRNA synthetase signature | 244 | 257 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Enbr6g03228 | 954 | PRINTS | Alanyl-tRNA synthetase signature | 89 | 100 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Enbr6g03228 | 954 | SUPERFAMILY | ThrRS-AlaRS common domain | 585 | 758 | IPR018163 | GO:0000166(InterPro) | |
| Enbr6g03228 | 954 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 687 | 745 | IPR012947 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro) | |
| Enbr6g03228 | 954 | Pfam | DHHA1 domain | 808 | 948 | IPR003156 | GO:0003676(InterPro) | |
| Enbr6g03228 | 954 | SUPERFAMILY | Translation proteins | 510 | 585 | IPR009000 | - | |
| Enbr6g03228 | 954 | SMART | tRNA-SAD-4 | 687 | 746 | IPR012947 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro) | |
| Enbr6g03228 | 954 | Coils | Coil | 799 | 819 | - | - | |
| Enbr6g03228 | 954 | Gene3D | - | 488 | 585 | - | - | |
| Enbr6g03228 | 954 | SUPERFAMILY | Class II aaRS and biotin synthetases | 12 | 263 | IPR045864 | - | |
| Enbr6g03228 | 954 | Gene3D | - | 841 | 949 | - | - | |
| Enbr6g03228 | 954 | CDD | AlaRS-core | 13 | 259 | - | - | |
| Enbr6g03228 | 954 | Gene3D | Bira Bifunctional Protein; Domain 2 | 12 | 260 | IPR045864 | - | |
| Enbr6g03228 | 954 | NCBIfam | alanine--tRNA ligase | 15 | 931 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Enbr6g03228 | 954 | FunFam | Alanine--tRNA ligase | 841 | 949 | - | - | |
| Enbr6g03228 | 954 | Hamap | Alanine--tRNA ligase [alaS]. | 1 | 953 | IPR023033 | GO:0004813(InterPro) | |
| Enbr6g03228 | 954 | PANTHER | ALANYL-TRNA SYNTHETASE | 8 | 950 | IPR050058 | GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER) | |
| Enbr6g03228 | 954 | Coils | Coil | 753 | 773 | - | - | |
| Enbr6g03228 | 954 | FunFam | Alanine--tRNA ligase, cytoplasmic | 586 | 761 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Enbr6g03228 | K01872 | alanyl-tRNA synthetase [EC:6.1.1.7] |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 2157961 | Enbr | Enbr3g00170 | Enbr-Chr3:3898310 | Enbr6g03228 | Enbr-Chr6:117435003 | |
| 2158810 | Enbr | Enbr3g01285 | Enbr-Chr3:38968806 | Enbr6g03228 | Enbr-Chr6:117435003 |