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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enbr6g03562 ATGGGTGACAACCAATATTCTTTCTCGCTAACTACTTTCAGCCCCTCTGGAAAGCTTGTTCAGATTGAACATGCCCTTACAGCTGTTGGCTCTGGTCAAACTTCATTGGGAATAAAAGCTTCAAACGGGGTTGTAATTGCAACGGAAAAGAAACTTCCATCTATTTTAGTCGACGAGACATCGGTGCAAAAGATTCAGATATTGACTCCTAACATTGGAGTAGTATATAGTGGGATGGGGCCCGATTCGCGAGTCTTGGTCAGAAAGAGTAGGAAGCAGGCAGAGCAGTACAATCTACTCTACAAAGAACCAATTCCCGTTACACAACTTGTAAGGGAAACCGCAGCTGTTATGCAAGAGTTTACCCAGTCGGGTGGTGTAAGACCTTTTGGTGTTTCTCTTCTTGTTGCTGGATATGATGACAAAGGTCCGCAATTATATCAGGTGGACCCCTCAGGTTCATATTTCTCATGGAAGGCATCAGCCATGGGGAAGAACGTGTCTAATGCGAAGACATTTCTTGAGAAGAGGTATACTGATGATATGGAGCTTGAGGATGCGATTCACACAGCCATTCTGACATTGAAGGAAGGATTTGAAGGACAAATTTCTGGCAAAAACATCGAGATCGGTGTTATCGAAGCTGACAGAAAAGTCTTGACTGCAGCTCAAATTGAAGACTATCTTCAAGAGGTGGAATAG 702 43.59 MGDNQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYNLLYKEPIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGFEGQISGKNIEIGVIEADRKVLTAAQIEDYLQEVE 233
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enbr6g03562 233 CDD proteasome-alpha-type-2 6 229 - -
Enbr6g03562 233 ProSiteProfiles Proteasome alpha-type subunit profile. 21 229 IPR023332 -
Enbr6g03562 233 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 4 230 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Enbr6g03562 233 Pfam Proteasome subunit 31 213 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Enbr6g03562 233 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Enbr6g03562 233 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 232 IPR029055 -
Enbr6g03562 233 SMART Proteasome-A-N-2 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Enbr6g03562 233 FunFam Proteasome subunit alpha type 3 233 - -
Enbr6g03562 233 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Enbr6g03562 233 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 3 233 IPR029055 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enbr6g03562 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Enbr Enbr-Chr6:131627455 Enbr6g03562 Enbr-Chr6:131683323 proximal