AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00871 ATGGTGGGGTTTTCTGCTCTTCCTCATTGGTTGCAATCCCTTCTTAGGGAGAGGTTCTTTAATACGTGCTTCGTTCATGAGACTGCGAAGAAGAATGAAAAGAACATCTTTTGCTTGGATTGCTGCACTAGCATCTGCCCTCATTGCTTATCTCCTCACCGCTCTCACAGACTCTTGCAGATACGGAGGTATGTTTATCACGACGTTATTCGTGTTGACGAAGTGGAGAAGCTAATCGACTGTGCCTTTGTTCAGCCTTACACGACGAACAGCGCAAAGGTGGTGTTCATAAACGAAAGGCCTCAATCTCGACCCTTCAGAGGCTCAGGAAACATCTGCAGTACCTGCGACAGGAGCCTGCAAGACCCATATCTCTTCTGTTCTATTGCCTGCAAGCTTTATCATCTTGTGAGGAGCGGAGCTGAGCTTTCTAAATATCTCTACGAGTGCGAATTTCTTCCATTACCAGAAGGAACGAAAGGAGAGAGCTATTGTGACCTTGATGAGGGACAAATGACGCCTGACTCAGTTCTTGAGTCGCCGATTTCTTTACACACCTCGTCTGGGTCGAGCGCGAGCGGTGGTGGAGTAGGTTGCAGGACTCTTGCCTGCACTGCCACAACTGAGTTTACTAAGAAGAAACGCAGTAGCGTATCGGGATCTCGTACACAGTATCGGCCTCCGACATGCTCTCATGCATCCGAAATTGCTATCAATATGAACCGGCGAAAGAGTATCCCGCACCGGTCACCGCTTTATTGA 762 48.43 MVGFSALPHWLQSLLRERFFNTCFVHETAKKNEKNIFCLDCCTSICPHCLSPHRSHRLLQIRRYVYHDVIRVDEVEKLIDCAFVQPYTTNSAKVVFINERPQSRPFRGSGNICSTCDRSLQDPYLFCSIACKLYHLVRSGAELSKYLYECEFLPLPEGTKGESYCDLDEGQMTPDSVLESPISLHTSSGSSASGGGVGCRTLACTATTEFTKKKRSSVSGSRTQYRPPTCSHASEIAINMNRRKSIPHRSPLY 253
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00871 253 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 6 252 - -
Eupl14g00871 253 ProSiteProfiles Zinc finger B-box type profile. 23 61 IPR000315 GO:0008270(InterPro)
Eupl14g00871 253 Pfam PLATZ transcription factor 62 133 IPR006734 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00871 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:18728511 Eupl14g00871 Eupl-Chr14:12148142 dispersed
Eupl Eupl-Chr14:12148142 Eupl3g01826 Eupl-Chr3:46469853 dispersed
Eupl Eupl-Chr14:12148142 Eupl13g00200 Eupl-Chr13:2756977 transposed
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl PLATZ 3.1e-29 No_clan TF PLATZ