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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00875 ATGAAAGAAGAAGCATCAGATGTCTGTGTTTCTATGACTCCAAGGTGGGATTTCAAAGTCCATGAAGTTGCTCAGAGCAGCTTCAGATATGCCCACCACCTTTTTAGCTGTATTTCTGACCAAACACAAGGGAGAAACATCCAAGAACTGAGCCTGATTGCTCAAGATGCAATAACTGAATTCAGGAAATTACTTACCCTCCTCGAGGGATCGAAGCCACGGGATTGTAAGAGGATCAGGAAGGGTCCTTTGCCGAATTCCCCTCATGTCAACCCCCAAGAATTACTGGATTGTCACAGTTCTCCAATTCAAACCTTTGGTTCCATTGCTACTCACCATCTCACAAATGAGCAGTTACTTCTCTTTCAGAGTAGTTGCTCACCATCTATTTTATCAACCAATAGTTTCAATTTGTATCGACAACTCGAGGCTCCAGCATTACAGAGCTGTTACTCTGAAAAAAATGTTGTAATTCCAAAGAATTCATTTGTGGGGCTGAACCGTCCTTTGTTCGCTTCTTCGATTAGTATTGATGGTAGTAGCGCCGATAAGCAGATTCTTCATTATTCGTCATCGGAAATTCTGACCTCTCGTGACGATTCTTCAATCTTCTCTTCCAAGAGAAAGTGTGGGGCAAAGAGTGAAGAAGCGGGTACACGATGTGTAGCATCGACCGGAGGATGTCACTGCTCGAAGCGAAGGAAGCTGAGGATAAAGAGAACAATCAGAGTCCGTGCCATAAGCAGCAAATTAGCAGATATACCTCCTGATGATTTCTCTTGGAGGAAATATGGGCAGAAGCCTATTAAAGGGTCTCCGCATCCGAGGAGCTATTACAAGTGCAGCAGCATGAGAGGATGTCCCGCAAGAAAGCACGTGGAACGATCTTTGGAGGATCCCACCATGTTGATTGTGACATATGAAGGAGACCACAACCACTCGAAAATTACATTTGCAGCGTCCAACATTGTAATTCAACAGTAG 984 44.11 MKEEASDVCVSMTPRWDFKVHEVAQSSFRYAHHLFSCISDQTQGRNIQELSLIAQDAITEFRKLLTLLEGSKPRDCKRIRKGPLPNSPHVNPQELLDCHSSPIQTFGSIATHHLTNEQLLLFQSSCSPSILSTNSFNLYRQLEAPALQSCYSEKNVVIPKNSFVGLNRPLFASSISIDGSSADKQILHYSSSEILTSRDDSSIFSSKRKCGAKSEEAGTRCVASTGGCHCSKRRKLRIKRTIRVRAISSKLADIPPDDFSWRKYGQKPIKGSPHPRSYYKCSSMRGCPARKHVERSLEDPTMLIVTYEGDHNHSKITFAASNIVIQQ 327
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00875 327 SMART WRKY-cls 255 315 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00875 327 Pfam WRKY DNA -binding domain 257 313 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00875 327 Gene3D WRKY domain 239 315 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00875 327 Pfam Plant zinc cluster domain 207 253 IPR018872 -
Eupl14g00875 327 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00875 327 FunFam WRKY transcription factor 65 239 316 - -
Eupl14g00875 327 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 41 318 IPR044810 GO:0003700(InterPro)
Eupl14g00875 327 SUPERFAMILY WRKY DNA-binding domain 253 314 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00875 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:20633696 Eupl14g00875 Eupl-Chr14:12228695 dispersed
Eupl Eupl-Chr14:12228695 Eupl3g01165 Eupl-Chr3:36100892 dispersed
Eupl Eupl-Chr14:12228695 Eupl7g00837 Eupl-Chr7:25675947 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00164 . 54 136 WRKY Transcription Factor family AT5G13080 85.542 1.63e-51 162.0
Eupl11g01218 . 162 450 WRKY Transcription Factor family AT5G45050 24.465 2.11e-10 63.2
Eupl11g01217 . 162 788 WRKY Transcription Factor family AT5G45050 23.259 1.00e-08 57.8
Eupl11g00885 . 1 286 WRKY Transcription Factor family AT1G69310 45.307 4.11e-69 214.0
Eupl11g00843 . 16 514 WRKY Transcription Factor family AT1G13960 57.435 8.34e-177 506.0
Eupl11g00698 . 22 467 WRKY Transcription Factor family AT5G15130 47.423 3.62e-104 324.0
Eupl11g00617 . 284 395 WRKY Transcription Factor family AT4G12020 50.0 1.25e-25 113.0
Eupl6g01846 . 168 349 WRKY Transcription Factor family AT5G45050 25.871 1.62e-06 50.4
Eupl6g01194 . 22 247 WRKY Transcription Factor family AT1G29280 51.739 2.68e-75 228.0
Eupl6g01189 . 162 552 WRKY Transcription Factor family AT5G45050 20.941 8.64e-09 57.8
Eupl6g00826 . 162 448 WRKY Transcription Factor family AT5G45050 21.212 5.78e-06 47.4
Eupl7g00519 . 149 416 WRKY Transcription Factor family AT5G45050 27.241 2.05e-08 55.1
Eupl6g01862 . 1 419 WRKY Transcription Factor family AT1G30650 46.014 4.72e-95 290.0
Eupl3g01165 . 1 339 WRKY Transcription Factor family AT4G24240 50.0 2.85e-102 303.0
Eupl3g01325 . 192 304 WRKY Transcription Factor family AT4G39410 76.991 9.64e-61 191.0
Eupl5g00860 . 118 197 WRKY Transcription Factor family AT3G62340 43.75 5.36e-17 72.8
Eupl8g00653 . 110 348 WRKY Transcription Factor family AT5G45050 28.517 1.18e-11 67.0
Eupl2g00370 . 1 550 WRKY Transcription Factor family AT1G62300 49.016 1.01e-146 433.0
Eupl2g00512 . 6 485 WRKY Transcription Factor family AT4G26640 48.162 7.06e-142 420.0
Eupl2g00648 . 1000 1448 WRKY Transcription Factor family AT4G12020 33.671 2.55e-53 202.0
Eupl2g00652 . 668 1448 WRKY Transcription Factor family AT4G12020 30.795 6.43e-88 314.0
Eupl1g01622 . 1 407 WRKY Transcription Factor family AT2G37260 47.072 6.12e-115 343.0
Eupl12g00300 . 162 446 WRKY Transcription Factor family AT5G45050 24.841 1.99e-09 60.5
Eupl12g00256 . 163 756 WRKY Transcription Factor family AT5G45050 22.609 2.09e-10 63.5
Eupl13g01578 . 6 179 WRKY Transcription Factor family AT5G64810 46.591 9.45e-43 140.0
Eupl13g01552 . 192 304 WRKY Transcription Factor family AT4G39410 72.566 1.18e-56 180.0
Eupl6g00450 . 51 550 WRKY Transcription Factor family AT1G62300 53.707 4.65e-157 457.0
Eupl1g00126 . 168 824 WRKY Transcription Factor family AT5G45050 22.008 7.71e-09 58.5
Eupl5g00035 . 166 434 WRKY Transcription Factor family AT5G45050 25.879 1.92e-07 53.5
Eupl5g00118 . 163 463 WRKY Transcription Factor family AT5G45050 26.807 6.26e-15 78.2
Eupl4g01833 . 162 633 WRKY Transcription Factor family AT5G45050 22.917 3.43e-08 55.8
Eupl4g01182 . 16 513 WRKY Transcription Factor family AT1G13960 58.79 0.0 528.0
Eupl4g01217 . 1 286 WRKY Transcription Factor family AT1G69310 47.302 2.35e-75 230.0
Eupl4g00977 . 35 467 WRKY Transcription Factor family AT5G15130 47.599 3.31e-110 339.0
Eupl4g00857 . 308 375 WRKY Transcription Factor family AT4G12020 37.681 2.52e-10 53.9
Eupl4g00856 . 291 395 WRKY Transcription Factor family AT4G12020 50.413 2.02e-24 110.0
Eupl4g00245 . 54 145 WRKY Transcription Factor family AT5G13080 83.696 1.70e-56 173.0
Eupl6g00127 . 14 585 WRKY Transcription Factor family AT5G45050 29.577 2.19e-72 253.0
Eupl6g00125 . 683 1448 WRKY Transcription Factor family AT4G12020 29.599 1.83e-79 288.0
Eupl6g00124 . 668 1448 WRKY Transcription Factor family AT4G12020 29.186 1.09e-83 301.0
Eupl6g00060 . 1 628 WRKY Transcription Factor family AT5G56270 46.434 4.19e-148 442.0
Eupl6g00276 . 3 485 WRKY Transcription Factor family AT4G26640 44.424 1.57e-127 383.0
Eupl6g00275 . 41 459 WRKY Transcription Factor family AT4G26640 43.478 4.12e-102 333.0
Eupl9g00515 . 20 171 WRKY Transcription Factor family AT5G26170 48.684 9.04e-43 137.0
Eupl12g00449 . 141 354 WRKY Transcription Factor family AT5G45050 26.201 5.63e-06 47.0
Eupl1g00551 . 162 456 WRKY Transcription Factor family AT5G45050 23.939 1.51e-09 60.5
Eupl1g00868 . 10 187 WRKY Transcription Factor family AT3G56400 46.739 9.87e-45 153.0
Eupl1g00869 . 11 287 WRKY Transcription Factor family AT2G40740 36.08 3.07e-49 165.0
Eupl1g00955 . 178 518 WRKY Transcription Factor family AT2G38470 55.556 4.51e-117 358.0
Eupl8g00359 . 3 306 WRKY Transcription Factor family AT4G11070 37.017 2.74e-60 194.0
Eupl8g00455 . 1 298 WRKY Transcription Factor family AT4G01250 43.02 1.13e-73 228.0
Eupl8g00451 . 66 176 WRKY Transcription Factor family AT5G41570 72.566 4.74e-58 178.0
Eupl8g00417 . 91 297 WRKY Transcription Factor family AT4G12020 57.488 6.96e-65 232.0
Eupl8g00886 . 1 218 WRKY Transcription Factor family AT2G44745 59.912 7.97e-73 218.0
Eupl9g01258 . 40 301 WRKY Transcription Factor family AT4G31800 39.446 8.44e-47 157.0
Eupl9g01248 . 110 464 WRKY Transcription Factor family AT4G30935 46.982 1.22e-100 306.0
Eupl9g01259 . 33 302 WRKY Transcription Factor family AT1G80840 52.381 2.87e-86 259.0
Eupl14g00875 . 229 373 WRKY Transcription Factor family AT2G30590 62.416 4.38e-59 192.0
Eupl10g00605 . 164 439 WRKY Transcription Factor family AT5G45050 22.5 3.21e-06 49.7
Eupl13g00112 . 162 746 WRKY Transcription Factor family AT5G45050 22.135 4.08e-13 71.6
Eupl13g00642 . 1 347 WRKY Transcription Factor family AT4G24240 53.05 3.16e-115 336.0
Eupl3g01536 . 91 286 WRKY Transcription Factor family AT4G12020 57.286 1.62e-65 232.0
Eupl3g01549 . 2 179 WRKY Transcription Factor family AT5G64810 44.565 2.30e-45 147.0
Eupl14g00227 . 5 306 WRKY Transcription Factor family AT4G11070 38.268 1.02e-58 190.0
Eupl14g00280 . 40 297 WRKY Transcription Factor family AT4G12020 50.758 1.71e-64 231.0
Eupl14g00320 . 8 108 WRKY Transcription Factor family AT2G46130 75.248 7.59e-56 171.0
Eupl14g00324 . 1 297 WRKY Transcription Factor family AT4G01250 41.425 1.31e-74 232.0
Eupl7g00837 . 1 330 WRKY Transcription Factor family AT5G28650 53.226 1.53e-118 344.0
Eupl5g01437 . 1 407 WRKY Transcription Factor family AT2G37260 45.339 1.39e-108 326.0
Eupl6g01714 . 166 349 WRKY Transcription Factor family AT5G45050 26.02 2.85e-06 49.7
Eupl6g01743 . 617 794 WRKY Transcription Factor family AT5G45050 33.168 1.59e-09 60.1
Eupl6g01745 . 162 341 WRKY Transcription Factor family AT5G45050 29.897 3.59e-09 58.5
Eupl5g00429 . 144 394 WRKY Transcription Factor family AT5G45050 27.509 1.04e-06 51.6
Eupl5g02268 . 178 518 WRKY Transcription Factor family AT2G38470 58.496 5.08e-119 354.0
Eupl5g02269 . 5 84 WRKY Transcription Factor family AT5G07100 53.488 8.69e-15 69.3
Eupl5g02377 . 4 287 WRKY Transcription Factor family AT2G40740 34.646 5.81e-52 174.0
Eupl5g02378 . 109 187 WRKY Transcription Factor family AT3G56400 61.25 5.00e-30 110.0
Eupl5g01858 . 1 263 WRKY Transcription Factor family AT5G43290 39.781 7.26e-51 167.0
Eupl10g00265 . 6 294 WRKY Transcription Factor family AT1G80840 49.839 4.28e-90 268.0
Eupl10g00264 . 32 290 WRKY Transcription Factor family AT1G80840 39.015 5.85e-48 159.0
Eupl10g00243 . 164 464 WRKY Transcription Factor family AT4G30935 48.547 4.43e-91 286.0
Eupl7g00250 . 73 549 WRKY Transcription Factor family AT5G56270 45.455 3.50e-121 379.0
Eupl10g00583 . 164 439 WRKY Transcription Factor family AT5G45050 22.5 3.38e-06 49.7
Eupl2g00927 . 22 247 WRKY Transcription Factor family AT1G29280 56.466 1.32e-79 239.0
Eupl9g00973 . 1 325 WRKY Transcription Factor family AT4G31550 59.412 7.63e-130 371.0
Eupl1g01811 . 1 263 WRKY Transcription Factor family AT5G43290 39.781 1.51e-43 148.0
Eupl7g01546 . 93 288 WRKY Transcription Factor family AT4G01250 39.419 3.01e-40 139.0
Eupl7g01587 . 32 264 WRKY Transcription Factor family AT2G47260 53.219 3.39e-57 184.0
Eupl13g01226 . 55 360 WRKY Transcription Factor family AT1G68150 48.485 1.40e-80 253.0
Eupl2g00744 . 1 685 WRKY Transcription Factor family AT5G56270 48.892 0.0 562.0
Eupl12g00626 . 1 380 WRKY Transcription Factor family AT2G30590 52.073 7.76e-118 344.0
Eupl2g01073 . 1 236 WRKY Transcription Factor family AT4G18170 50.787 1.57e-64 204.0
Eupl11g01462 . 162 450 WRKY Transcription Factor family AT5G45050 25.982 1.07e-10 63.5
Eupl1g00275 . 167 349 WRKY Transcription Factor family AT5G45050 25.888 1.88e-07 53.1
Eupl12g01257 . 29 336 WRKY Transcription Factor family AT2G47260 47.403 3.44e-63 201.0
Eupl12g01212 . 88 288 WRKY Transcription Factor family AT4G01250 38.075 2.29e-37 132.0
Eupl12g01365 . 46 503 WRKY Transcription Factor family AT4G04450 43.685 2.61e-100 310.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl WRKY 2.5e-27 CL0274 TF WRKY