AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00876 ATGGGGAGAGCGAAGAAAACCCGTAAATTTGCAGTCACAAAGAAGATGGTTAGCTCAAAAATGATTCGGAAACACAAAGAAGAGGTTTTAAACCCTAATAAGAAAGATCTCGAGAAGGAAAAACTCCCCAGAAACGTCCCGAATGTTTCTTCAGCGCTTTTCTTTAAACACAACACTGCATTGGGGCCGCCTTATCGGGTTTTGGTCGACACCAATTTCATTAATTTCTCTATTCAGAATAAGTTGGATTTGGAGAAAGCAATGATGGATTGCTTGTATGCAAAATGCACTCCTTGTATTACGGATTGTGTCATGGCGGAGCTCGAGAAGCTAGGCCAGAAGTATCGTGTTGCTTTGAGGATTGCAAAGGATCCTCGGTTTGAGAGACTCCCTTGCACTCACAAAGGAACCTATGCTGATGACTGCATTGTTGATAGAGTTACTCAGCATAAGTGCTATATTGTTGCTACATGTGATCGAGACTTGAAGCGAAGGATCCGTAAGATTCCTGGTGTGCCAATCATGTATATCACTCAACATAAGTATTCAATTGAGCGGCTGCCTGAAGCGACCATTGGTGGAGCTCCAAGATTTTGA 597 42.71 MGRAKKTRKFAVTKKMVSSKMIRKHKEEVLNPNKKDLEKEKLPRNVPNVSSALFFKHNTALGPPYRVLVDTNFINFSIQNKLDLEKAMMDCLYAKCTPCITDCVMAELEKLGQKYRVALRIAKDPRFERLPCTHKGTYADDCIVDRVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITQHKYSIERLPEATIGGAPRF 198
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00876 198 SMART PIN-9 65 164 IPR002716 -
Eupl14g00876 198 FunFam rRNA-processing protein FCF1 homolog 49 191 - -
Eupl14g00876 198 CDD PIN-Fcf1-like 55 185 IPR037503 -
Eupl14g00876 198 Gene3D - 50 192 - -
Eupl14g00876 198 Pfam Fcf1 90 186 IPR006984 GO:0032040(InterPro)
Eupl14g00876 198 PANTHER UNCHARACTERIZED 9 191 - GO:0005730(PANTHER)|GO:0032040(PANTHER)
Eupl14g00876 198 SUPERFAMILY PIN domain-like 63 187 IPR029060 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00876 K14566 U3 small nucleolar RNA-associated protein 24
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:3505155 Eupl14g00876 Eupl-Chr14:12248160 dispersed