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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00878 ATGTCGGCTTGGATGGACGAAGATCCTCGTATCCGTGGCATCAAAACTAAGATTCGAGTTGTTCCTAATTTCCCCAAACCAGGGATTATGTTTCAAGACATCACGACTCTGCTACTTGATCCCAAGACCTTCAAGAACACCGTTGATTTGTTCGTCGAGCGATACAAAGGAAAAAACATATCGGTCGTCGCAGGAATCGAGGCTCGGGGCTTTATATTTGGTCCTCCCATTGCATTGGCGATTGGTGCAAAGTTTGTTCCATTGAGAAAACCAAAAAAGTTGCCTGGGGAAGTCATTTCAGAAGAGTATGTGTTGGAATATGGAAGGGATTGTCTGGAAATGCACACTGGAGCAGTTGAACAAGGTGAACGTGCTTTGGTAGTTGATGATTTGATTGCTACAGGAGGTACACTCTGTGCGGCAATAAAATTACTTGAGCGTGTTGGGGCCGAAGTGGTCGAATGTGCATGTGTAATTGAGCTACCCGATCTGAAGGGTCGTGAGCGATTAAATGGTAAGCCATTATATATACTCGTGGAATCTCACTAA 549 44.63 MSAWMDEDPRIRGIKTKIRVVPNFPKPGIMFQDITTLLLDPKTFKNTVDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFVPLRKPKKLPGEVISEEYVLEYGRDCLEMHTGAVEQGERALVVDDLIATGGTLCAAIKLLERVGAEVVECACVIELPDLKGRERLNGKPLYILVESH 182
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00878 182 Gene3D - 2 182 IPR029057 -
Eupl14g00878 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Eupl14g00878 182 CDD PRTases-typeI 48 180 IPR000836 -
Eupl14g00878 182 Pfam Phosphoribosyl transferase domain 53 163 IPR000836 -
Eupl14g00878 182 SUPERFAMILY PRTase-like 13 174 IPR029057 -
Eupl14g00878 182 FunFam Adenine phosphoribosyltransferase 1 2 181 - -
Eupl14g00878 182 NCBIfam adenine phosphoribosyltransferase 14 180 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Eupl14g00878 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 6 181 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00878 K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr13:14095141 Eupl14g00878 Eupl-Chr14:12293683 dispersed
Eupl Eupl-Chr14:12293683 Eupl9g01451 Eupl-Chr9:30071614 dispersed
Eupl Eupl-Chr14:12293683 Eupl3g01037 Eupl-Chr3:33984126 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00232 . 8 483 PRT gene family AT5G40870 85.084 0.0 823.0
Eupl11g01105 . 39 207 PRT gene family AT1G55810 22.159 1.18e-07 53.5
Eupl11g01533 . 63 242 PRT gene family AT5G40870 26.667 7.64e-17 82.0
Eupl4g01419 . 63 344 PRT gene family AT5G40870 23.397 1.38e-18 87.4
Eupl2g00640 . 1 466 PRT gene family AT1G55810 81.705 0.0 811.0
Eupl8g01156 . 80 566 PRT gene family AT2G16570 84.394 0.0 850.0
Eupl8g01222 . 31 244 PRT gene family AT3G27440 26.923 1.03e-18 85.9
Eupl13g01572 . 1 187 PRT gene family AT1G71750 67.38 5.59e-92 265.0
Eupl4g00503 . 4 448 PRT gene family AT3G27440 74.382 0.0 695.0
Eupl6g00137 . 1 176 PRT gene family AT4G26510 72.376 1.97e-89 268.0
Eupl6g00136 . 272 469 PRT gene family AT4G26510 89.899 8.66e-131 374.0
Eupl14g00878 . 7 181 PRT gene family AT4G22570 85.714 6.49e-106 299.0
Eupl3g01403 . 186 289 PRT gene family AT2G16570 37.736 8.05e-08 53.1
Eupl9g01451 . 1 184 PRT gene family AT5G11160 81.522 5.26e-108 305.0
Eupl3g01037 . 61 241 PRT gene family AT1G27450 81.768 2.84e-106 303.0
Eupl5g01925 . 1 225 PRT gene family AT3G53900 74.667 2.77e-128 362.0
Eupl13g00938 . 60 241 PRT gene family AT1G27450 76.374 4.62e-99 289.0
Eupl12g00649 . 30 169 PRT gene family AT3G27440 24.699 8.92e-06 45.4
Eupl5g00198 . 125 267 PRT gene family AT4G38880 28.743 7.27e-07 50.4