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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00882 ATGAGTAGCGGAGATCTTCTCAACATTCAACCCACAGAACTCAAATTTCCATTCGAATTGAAAAAGCAGAGCTCATGTTCTCTGCAATTGACTAACAAGACGGATGAGTATGTAGCATTCAAGGTTAAAACAACCAATCCGAAGAAATACTGCGTGCGACCCAACACGGGAGTCGTTTTGCCAGGGGCGACATGCGATGTTACAGTTACAATGCAAGCCCAAAAGGAGACCCCAGCTGATCTGCAATGCAAAGACAAGTTCCTCCTTCAGAGCGTTACTGCACCTCATGGTGTAACCACAAAGGACATAACCCCGGAAATGTTCAATAAAGAAGCTGGGAAAGTTGTGGAGGAGTTCAAATTGAGGGTTATTTACATTCCTGCTAATCCCCCCTCACCAGTCCCTGAGGGATCCGAAGAAGGATCTTCTCCTAGGGCATCTGTTCTAGAGAATGGGAATCAAGGCGCTTCGTTGTTTGATGCTGTGTCAAGATCTTTAGAGGAGCCTAAAGAGAAATCGTCAGAGGTGTCGTCTATGATTTCCAAGTTGACTGAGGAGAAAACTTCTGTCATTCAACAAAATCAGAAACTCCGTCAAGAATTGGACTTGATGAGAAAAGAAATTAGCAAAAGCCGTGCTGGTGGTTTCTCCTTCATGTTCGTGGTGCTGATCGGTCTCCTGGGCATCCTGTTTGGATACCTTTATAAGAAGACATAG 717 44.77 MSSGDLLNIQPTELKFPFELKKQSSCSLQLTNKTDEYVAFKVKTTNPKKYCVRPNTGVVLPGATCDVTVTMQAQKETPADLQCKDKFLLQSVTAPHGVTTKDITPEMFNKEAGKVVEEFKLRVIYIPANPPSPVPEGSEEGSSPRASVLENGNQGASLFDAVSRSLEEPKEKSSEVSSMISKLTEEKTSVIQQNQKLRQELDLMRKEISKSRAGGFSFMFVVLIGLLGILFGYLYKKT 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00882 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 235 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Eupl14g00882 238 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Eupl14g00882 238 SUPERFAMILY PapD-like 2 138 IPR008962 -
Eupl14g00882 238 Coils Coil 180 214 - -
Eupl14g00882 238 PIRSF VAMP-assoc-prot 1 237 IPR016763 GO:0005789(InterPro)
Eupl14g00882 238 FunFam Vesicle-associated protein 1-1 1 129 - -
Eupl14g00882 238 Gene3D Immunoglobulins 2 129 IPR013783 -
Eupl14g00882 238 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Eupl14g00882 238 MobiDBLite consensus disorder prediction 130 150 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00882 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:27692288 Eupl14g00882 Eupl-Chr14:12426266 dispersed
Eupl Eupl-Chr14:12426266 Eupl14g00918 Eupl-Chr14:13059421 dispersed
Eupl Eupl-Chr14:12426266 Eupl7g01262 Eupl-Chr7:32931836 transposed