AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00899 ATGGCAAAGAGTTACTTCAAGCAAGAGCATGACCTTGAGAAGAGGCGGGCTGAAGCTGCTAGAATTAGGGAGAAATACCCGGACAGGATCCCGGTCATTGTCGAGAAAGCGGAGAGAAGCGATATCCCAAACATTGATAAGAAAAAGTACCTCGTACCAGCTGACTTGACTGTTGGGCAATTCGTCTACGTAATCCGCAAGAGAATCAAATTGAGCGCAGAGAAGGCAATCTTCATATTCGTAGACAACGTCCTCCCACCTACAGGGGCAATAATGTCTACAATATACGACGATAAGAAGGATGAAGACGGGTTTCTGTATGTTACTTACAGTGGAGAGAACACATTTGGGATCCAGATTGTGCTGTAG 369 45.53 MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSTIYDDKKDEDGFLYVTYSGENTFGIQIVL 122
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00899 122 FunFam Autophagy-related protein 1 117 - -
Eupl14g00899 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Eupl14g00899 122 Gene3D - 1 118 - -
Eupl14g00899 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Eupl14g00899 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 4 117 IPR004241 GO:0006995(PANTHER)
Eupl14g00899 122 CDD Ubl-ATG8 12 114 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00899 K08341 GABA(A) receptor-associated protein
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:29941074 Eupl14g00899 Eupl-Chr14:12682603 dispersed
Eupl Eupl-Chr14:12682603 Eupl6g00480 Eupl-Chr6:7066616 dispersed
Eupl Eupl-Chr14:12682603 Eupl2g00342 Eupl-Chr2:3879973 transposed