AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00908 ATGAGTATAGGGGAGTCTGATAACATTGAGGAGCTGGCCAGGATTCTGGGTTGCTCCATAGGTTCTTTGCCCTCCTCCTTTCTCAGACCCCCTTTGGGAGCGCCATATAGGGCAAAATCGGTTTGGGACCCAGTAGTGGAAAGGGTTAGGCGTCAGTTGGCTAGCTGGAAGGGGAGATACCTATCCAAATGGGGCAAGTTGGTTCTTATCGAGAGCACATTGTTTAGTCTACCTGTGTATTTCCTCTCTCTGTTCTCTATACCGTTAGAGGTGGAGAAAAGGTTAGAGAGGTTTATGAGAAACTTTTTGTGGAATAACTCGGGGGATTCGTTCAGATATCACCTTGTGAAGTGGGCCCAAGCGTGTTTGTCCAAGAAAGGGGGTGGCCTAGGTTTCAGAAAGATTGGTGTTATGAATAAGGCGCTATTGGGCAAATGGATATGGAGATTTGGAAAGGAGAGAAATAGTTTGTGGCGTAGAGTAGTTGCTAGCATTTACGGGGAGGAGGAGGGGGGTTGGGTGTCTAAGCCCCATAGTGGGTCAACTTGGTGTGGGGTTTGGAGAGGGATTCTCAAGTGCAAAGGGCAAACAGTTGATCATTTTTTGATCGGTTCTTCCCTGGAAACAAGATGGGATTTGAAACTCAGAAGGAATCCTTTTGAGTGGGAAAAAGAGCAGATTAATTTTTTGCATGATTGTTTGAAATATTATCTTGTTTCCAATTCTGAGGACCATATGTTCTGGACCTACTCCAAGACGGGAGATTTCTCGGTCCAGTCACTGTATGAGATATTATCATCTACATCAGTATCGTCATCTACCTGTTATCCTTGCTTAGAAATTTGGAAATCCAAAGCCCCACAAAAAGTCCGCTTCTTTGCTAGGCTTGCCACCCTGAATAAGATCCTTACTGTACAAAATTTGATCATTAGGAAATGGATCTTGGTAGACTATTGTGTTATGTGCAAGGCAAGTGGGGAGAGCACTAATCATCTTCTAGTTCATTGTGAGTTCGCTAGACAGGTTTGGACATTCTTCCTAGAGCAGGTGGGTGTTGCTTGGGTCTTTCCGGAAAGCATAGGGGCAGTTATGGAGAGATGTCCTAAAGTTCTTATGTCGGCCAGGGGAAAGTTGTTGTGGAAGATGATTCCGCTAGCAATTATCTGGGGAGTGTGGCTGGAGCGGAATAAGAAAAGGCAAGGGGAGCTCGCTTTTTCACGTCATCCTGAGTATCAAGGCTCTCTTATACCGCTGGGAGAGAAGAGGAGTTTCAAACGAATGGGGATAATCAAGAGCAGTTTCTCATTCTTGATGGGGACCGTGTGTGGAGTTTACATTGCTCGGAACTACAACGTTCCCAACATAGAGAAGCTCGCGAAAATGGGGCTCTTGATAGCCAAACACATTGAAGAGACTTATCGAAAGCCCAAGAAGTGA 1437 45.37 MSIGESDNIEELARILGCSIGSLPSSFLRPPLGAPYRAKSVWDPVVERVRRQLASWKGRYLSKWGKLVLIESTLFSLPVYFLSLFSIPLEVEKRLERFMRNFLWNNSGDSFRYHLVKWAQACLSKKGGGLGFRKIGVMNKALLGKWIWRFGKERNSLWRRVVASIYGEEEGGWVSKPHSGSTWCGVWRGILKCKGQTVDHFLIGSSLETRWDLKLRRNPFEWEKEQINFLHDCLKYYLVSNSEDHMFWTYSKTGDFSVQSLYEILSSTSVSSSTCYPCLEIWKSKAPQKVRFFARLATLNKILTVQNLIIRKWILVDYCVMCKASGESTNHLLVHCEFARQVWTFFLEQVGVAWVFPESIGAVMERCPKVLMSARGKLLWKMIPLAIIWGVWLERNKKRQGELAFSRHPEYQGSLIPLGEKRSFKRMGIIKSSFSFLMGTVCGVYIARNYNVPNIEKLAKMGLLIAKHIEETYRKPKK 478
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00908 478 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 27 259 - -
Eupl14g00908 478 Pfam Domain of unknown function (DUF4535) 432 476 IPR027854 -
Eupl14g00908 478 Pfam zinc-binding in reverse transcriptase 256 343 IPR026960 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00908 K27319 short transmembrane mitochondrial protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:19301360 Eupl14g00908 Eupl-Chr14:12913526 dispersed
Eupl Eupl-Chr12:12451760 Eupl14g00908 Eupl-Chr14:12913526 dispersed
Eupl Eupl-Chr14:12913526 Eupl4g01449 Eupl-Chr4:23533295 dispersed
Eupl Eupl-Chr14:12857089 Eupl14g00908 Eupl-Chr14:12913526 proximal
Eupl Eupl-Chr14:12913526 Eupl14g00909 Eupl-Chr14:12926421 tandem