AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00913 ATGGGGACGACGAGGACCAATTTCTACAAGAATCCTTCCTTCGTATACAACAAAGATTTCAATCTCTCCTCTGTTCTTCAAAACCTCAGAGCATACAACGTTGCCACCGGGAACGCTCCTCTCATCGAAGAGCCACAATCCATCAATCAGAAAAAGGTTCGTAAACGCAGTCCAGATCGAAAACCAAATCCTGATCGCGATGAGAGAAGTGTAGACGAGAACGACGGACCCCTCACTCATCAGAGCTACATTGAAAAGAGAAGGAAAGAAGTCAGGTCAGCTCAGGTTTATCAGGAATTGACTCCAGATGTATTGGGAAATTCCAATTCAAGTTTTCAACCTTTGGTACAATATGAAAGTGATGAAAGTACATCGTCGGGAGATCCTGAAGAAAAACAGGATGCACCAAGTTCTGATCATGTGGATGAAACTGATCATGTTAAGGAAAGAGCTGAGCAACGATTTCCAGTTCCTGGGGAACCTGTTTGTGTGGTATGTGGCAAATATGGAGAATATATATGCAATGAGACTGGTGATGATATCTGCAGTATTGATTGCAAAGCTGAGCTGCTGAAACCTCAAAATCTTGACTTGTCTGAGAGAGCGATTAGTTGCCAAGACTCTCTTACAGGATTTTCTGGACCTAAAGGCTCGTTACAGACGCCCAAGTTTAAGGAGGATACTTGGGATTTTGGCCGGCACCAATGGACCAAAAAGAGATCCAGTCTATGTTCATATGAATGTTGGAAATGTCAGAGGCCTGGCCACCTTGCAGAAGATTGTCTGGTGACTCCTTCCACTTCAACATGCAGCCAGAAGCCAGTGGGAGCTCACAACTCTAGTTCCATATCCAGAGATCTTCTTGCTCTCTACAGAAGATGCCACCAGATAGGCAAAAACATATCAACTGCAAAATGCAATATATGCCGAGGTTCATCAAGCTTGGCAATGTGCCTTGATTGTAGTACAATAATTTGTGACAGTGCAGGTCATCTGAATGAGCATATTGTTGCACATTCCTCTCATCGACAATTTTACTCCTATAAGCTCCAGCGTTTGGTGAAATGCTGTAAATCAACATGCAATGTGACAGACATCAAGGATCTTTTAGCTTGCCACTACTGCCTTGATAAAGCCTTTGACAAGTTCTATGATATGTACACTGCCACATGGAAAAGAGCTGGACTTTCAATCATCTGGGGTTCCATTTGCTGTGATGAACACTTCACTTGGCACAGGATGAATTGCTTGAGTGCAGATGTAGAAGGCAGTGGATATATTATCAGCAATCGTGCACAGAGAGACAAGATTGGTCAGATCAGTGATTTCATTTTCTGA 1338 43.12 MGTTRTNFYKNPSFVYNKDFNLSSVLQNLRAYNVATGNAPLIEEPQSINQKKVRKRSPDRKPNPDRDERSVDENDGPLTHQSYIEKRRKEVRSAQVYQELTPDVLGNSNSSFQPLVQYESDESTSSGDPEEKQDAPSSDHVDETDHVKERAEQRFPVPGEPVCVVCGKYGEYICNETGDDICSIDCKAELLKPQNLDLSERAISCQDSLTGFSGPKGSLQTPKFKEDTWDFGRHQWTKKRSSLCSYECWKCQRPGHLAEDCLVTPSTSTCSQKPVGAHNSSSISRDLLALYRRCHQIGKNISTAKCNICRGSSSLAMCLDCSTIICDSAGHLNEHIVAHSSHRQFYSYKLQRLVKCCKSTCNVTDIKDLLACHYCLDKAFDKFYDMYTATWKRAGLSIIWGSICCDEHFTWHRMNCLSADVEGSGYIISNRAQRDKIGQISDFIF 445
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00913 445 ProSiteProfiles Zinc finger CCHC-type profile. 248 261 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Eupl14g00913 445 MobiDBLite consensus disorder prediction 117 153 - -
Eupl14g00913 445 PANTHER CCHC-TYPE DOMAIN-CONTAINING PROTEIN 3 445 - -
Eupl14g00913 445 MobiDBLite consensus disorder prediction 43 84 - -
Eupl14g00913 445 Gene3D - 142 198 - -
Eupl14g00913 445 Pfam HIT zinc finger 160 187 IPR007529 -
Eupl14g00913 445 MobiDBLite consensus disorder prediction 48 84 - -
Eupl14g00913 445 SUPERFAMILY Retrovirus zinc finger-like domains 234 261 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Eupl14g00913 445 MobiDBLite consensus disorder prediction 125 153 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00913 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:12953800 Eupl8g01036 Eupl-Chr8:28912403 dispersed