AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00914 ATGAATCCTGACAAATTCACCCACAAAACCAATGAGGCTATTGCTGGAGGTCACGAATTGGCCTTGAACTCTGGTCATGCACAGTTCACTCCAATTCACCTTGCTCTTGCATTGATCTCTGATCCCAATGGCCTTCTCCGCCAAGCAATTTCCAATGCTGCTGGTGGAGATGAAGCAGCAAACTCATTTGAGCGTGTACTCAAGCAAGCGATGAAGAAAATACCCTCCCAAAGTCCTCCCCCGGATGAAGTCCCTCCTAGTAGTACTCTTATCAAAGTGATCAGACGAGCCCAATCTGCACAGAAATCCCGTGGTGATACCCATCTTGCAGTTGACCAACTGATCCTTGGTCTCCTTGAGGATTCACAAATAGGAGACATCCTCAAAGAGGCCGGGGTCAGCGTGGCAAGAGTAAAATCAGAGGTTGAGAAGCTTCGGGGGAAGGAAGGAAGGAAGGTCCAGAGTGCTTCCGGCGATACCAATTTTCAGGCTTTGAAGACCTATGGCCGTGACCTCGTCGAGCAGGCGGGGAAGCTTGATCCAGTCATCGGTCGGGATGAAGAGATACGAAGAGTTATTAGGATTCTATCAAGAAGAACCAAAAACAATCCAGTTCTGATTGGTGAGCCTGGTGTGGGTAAAACTGCTGTGGTCGAAGGCCTTGCTCAGAGGATAGTAAGGGGAGATGTCCCAAGCAATCTTGCCGATGTGAGTCTTGTAGCCTTGGACATGGGTGCGCTGATTGCTGGTGCAAAATACAGAGGAGAATTTGAGGAGAGGTTGAAAGCTGTACTAAAAGAAGTTGAAGAGGCTGAAGGGAAGGTGGTTCTTTTCATTGATGAGATCCATCTTGTCCTTGGAACTGGTCGGACTGAGGGTTCAATGGATGCAGCCAACCTCTTCAAGCCAATGCTTGCCCGAGGCCAACTCCGGTGCATTGGTGCAACCACCCTTGAGGAGTACAGGAAGTATGTGGAGAAAGATGCAGCATTTGAGCGACGACTCCAGCAGGTTTATGTTGCCGAGCCTAATGTTGCAGACACAATAAGCATCCTTCGAGGACTGAAAGAGAGATACGAAGGTCATCATGGTGTTCGAATTCTAGATCGGGCTCTTGTAGTTGCTGCCCAGCTATCCAGTCGTTACATAACTGGTCGTCATCTCCCGGACAAGGCAATTGATCTGGTTGATGAAGCGTGTGCAAATGTGAGAGTTCAGCTTGATAGCCAGCCGGAAGAGATAGATAAACTTGAAAGGAAGAGAATTCAGTTAGAAGTTGAACTCCATGCTCTTGAAAGAGAGAAGGACAAAGCAAGCAAAGCTCGGCTCATTGAAGTCCGAAAGGAGCTGGATGATTTGAGGGATAAGCTGCAGCCATTGATGATGAAGTACAGGAAGGAGAAAGAGAGGATTGATGAAATCCGTAGGTTGAAACGAAGGCGGGAGGAGCTCTTGATTAGCTTACAAGAGGCTGAAAGAAGAATGGATTTAGCGAGAGTTGCTGACCTGCGATATGGGGCAATCCAGGAGATAGAGTCAGCCATAGCAAAACTTGAAGGGGACACTAACGAGGAGAACTTAATGCTTACTGAAACTGTTGGACCTGATCAGATTGCAGAAGTGGTGAGTCGTTGGACTGGCATTCCAATCACAAGGCTTGGTCAGAATGAAAAGGAGAGGTTAATTGGCCTTGCTGAGAGGCTGCACAAGAGAGTGGTGGGACAAGATCAAGCTGTAGAATCAGTTGCAGAGGCTGTGTTGAGGTCCAGGGCAGGGTTAGGCCGTCCACAACAGCCAACTGGGTCATTCCTCTTCTTGGGTCCGACTGGTGTCGGTAAGACTGAGCTTGCTAAGGCCCTTGCTGAGCAACTCTTCGATGATGAAAAGCTCCTAGTACGAATCGATATGTCAGAGTACATGGAACAACACTCTGTCTCACGGTTAATTGGTGCTCCTCCTGGATATGTTGGCCACGACGAAGGTGGGCAGCTCACAGAGGCTGTGAGGCGGAGGCCTTACAATGTTGTACTATTTGATGAAGTTGAGAAGGCACATGTGTCTGTGTTCAATGCCCTCCTCCAAGTTCTTGACGATGGAAGATTAACTGATGGCCAAGGACGCACTGTAGACTTCACCAATACGGTGCTTATCATGACTTCGAACCTAGGAGCAGAGCACCTTTTAGCTGGACTGAAGGGCAAGTGTTTAATGGAGAGTGCCAGGGAACGAGTAATGCAAGAGGTGAGGAGGCATTTCAGGCCAGAACTACTCAATCGGCTTGATGAGATTGTTGTGTTTGATCCTCTCTCACATGAGCAGCTGAGGAAGGTTGCTAGGCTGCAGATGAGGGATGTAGCAAGCCGCCTGGCTGAGAGAGGTATTGCTTTAGCAGTATCAGATGCTGCCTTGGAGATTGTACTATTACAGAGTTATGATCCGGTTTATGGCGCAAGGCCAATGAGGAGGTGGATAGAGAAGAAGGTGGTGACAGAGCTGTCAAAGATGCTTGTAAGGGAGGAGATTGATGAGAACTCTACAGTTTATATTGATGCAGGGCCAGGGGGCAATGAACTCATTTTTCAGGTGGAGAAGAATGGTGGGCTTGTTAATGCAAGCACGGGGAAGAAGGCGGATATACTAATTGAGATCCCAGATGGGCGGAGGAACAATGCTGCCCAGGCAGTAAAGAAGACGAAGATAGAGGAGATTGACGAGGATGAGGAGATGGATGCGTGA 2736 48.5 MNPDKFTHKTNEAIAGGHELALNSGHAQFTPIHLALALISDPNGLLRQAISNAAGGDEAANSFERVLKQAMKKIPSQSPPPDEVPPSSTLIKVIRRAQSAQKSRGDTHLAVDQLILGLLEDSQIGDILKEAGVSVARVKSEVEKLRGKEGRKVQSASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVIRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVSLVALDMGALIAGAKYRGEFEERLKAVLKEVEEAEGKVVLFIDEIHLVLGTGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRLQQVYVAEPNVADTISILRGLKERYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDKLERKRIQLEVELHALEREKDKASKARLIEVRKELDDLRDKLQPLMMKYRKEKERIDEIRRLKRRREELLISLQEAERRMDLARVADLRYGAIQEIESAIAKLEGDTNEENLMLTETVGPDQIAEVVSRWTGIPITRLGQNEKERLIGLAERLHKRVVGQDQAVESVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDEKLLVRIDMSEYMEQHSVSRLIGAPPGYVGHDEGGQLTEAVRRRPYNVVLFDEVEKAHVSVFNALLQVLDDGRLTDGQGRTVDFTNTVLIMTSNLGAEHLLAGLKGKCLMESARERVMQEVRRHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMRDVASRLAERGIALAVSDAALEIVLLQSYDPVYGARPMRRWIEKKVVTELSKMLVREEIDENSTVYIDAGPGGNELIFQVEKNGGLVNASTGKKADILIEIPDGRRNNAAQAVKKTKIEEIDEDEEMDA 911
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00914 911 Pfam Clp amino terminal domain, pathogenicity island component 18 61 IPR004176 -
Eupl14g00914 911 Pfam Clp amino terminal domain, pathogenicity island component 97 147 IPR004176 -
Eupl14g00914 911 Coils Coil 407 441 - -
Eupl14g00914 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 850 IPR027417 -
Eupl14g00914 911 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Eupl14g00914 911 SMART AAA-5 200 345 IPR003593 GO:0016887(InterPro)
Eupl14g00914 911 SMART AAA-5 599 741 IPR003593 GO:0016887(InterPro)
Eupl14g00914 911 FunFam Chaperone clpB 1, putative 153 344 - -
Eupl14g00914 911 PANTHER ATP-DEPENDENT CLP PROTEASE 4 864 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
Eupl14g00914 911 Pfam AAA lid domain 345 443 IPR041546 -
Eupl14g00914 911 Pfam C-terminal, D2-small domain, of ClpB protein 769 848 IPR019489 -
Eupl14g00914 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 547 IPR027417 -
Eupl14g00914 911 ProSitePatterns Chaperonins clpA-B signature 2. 633 651 IPR028299 -
Eupl14g00914 911 Gene3D - 345 546 IPR027417 -
Eupl14g00914 911 Pfam ATPase family associated with various cellular activities (AAA) 205 317 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Eupl14g00914 911 Pfam AAA domain (Cdc48 subfamily) 599 763 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Eupl14g00914 911 CDD RecA-like-ClpB-Hsp104-like 560 766 - -
Eupl14g00914 911 Gene3D - 151 344 IPR027417 -
Eupl14g00914 911 CDD AAA 183 338 - -
Eupl14g00914 911 SMART ClpB-D2-small-2 769 860 IPR019489 -
Eupl14g00914 911 Gene3D - 769 868 - -
Eupl14g00914 911 Coils Coil 474 501 - -
Eupl14g00914 911 FunFam ATP-dependent Clp protease subunit 552 767 - -
Eupl14g00914 911 Gene3D - 552 768 IPR027417 -
Eupl14g00914 911 Gene3D - 3 149 IPR036628 -
Eupl14g00914 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 677 695 IPR001270 GO:0005524(InterPro)
Eupl14g00914 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 603 621 IPR001270 GO:0005524(InterPro)
Eupl14g00914 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 710 724 IPR001270 GO:0005524(InterPro)
Eupl14g00914 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 648 666 IPR001270 GO:0005524(InterPro)
Eupl14g00914 911 ProSiteProfiles Clp repeat (R) domain profile. 3 148 IPR004176 -
Eupl14g00914 911 Coils Coil 254 274 - -
Eupl14g00914 911 ProSitePatterns Chaperonins clpA-B signature 1. 296 308 IPR018368 GO:0005524(InterPro)
Eupl14g00914 911 FunFam ATP-dependent chaperone ClpB 1 149 - -
Eupl14g00914 911 FunFam ATP-dependent chaperone ClpB 345 546 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00914 K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:11200364 Eupl14g00914 Eupl-Chr14:12978786 dispersed
Eupl Eupl-Chr13:33544016 Eupl14g00914 Eupl-Chr14:12978786 dispersed
Eupl Eupl-Chr13:33558597 Eupl14g00914 Eupl-Chr14:12978786 dispersed
Eupl Eupl-Chr13:33587001 Eupl14g00914 Eupl-Chr14:12978786 dispersed
Eupl Eupl-Chr13:33658748 Eupl14g00914 Eupl-Chr14:12978786 dispersed
Eupl Eupl-Chr14:12978786 Eupl4g00153 Eupl-Chr4:2606574 dispersed
Eupl Eupl-Chr14:12978786 Eupl3g01543 Eupl-Chr3:42038260 transposed