AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00917 ATGGCTTCATCAATCGCTTTAAGGAGGACCACCGCCTCAAGCCTCCTCAACAAATTCTTCCAGCCGATCCGCTCCGTCGCAGTCGCACCATCCACCGCTCGCTCCTTCAACACCAACACTCAGATGCGCGAGGTCGACGATGAGGATCGCAGCATCGACATCGATCGCCGCTCCGATCAGTCCATCTCTAGTCGCCGTGACTCCTCTCCCGATTTTTTCTCAGGTAATGTGTTTGATCCGTTTTCTCCGACGAGGAGCCTGAGCCAGGTGTTGAACATGATGGATCAGTTCATGGAGAGTCCGTTCTTGGCGACGTCGAGAGGTATGGGAGCAGTACCGAAGAGAGGATGGGATGTAAAGGAAGACGACAACAGTCTGTATCTAAGGATCGACATGCCAGGGTTGAGCAAAGACGACGTGAAGGTCTCTGTGGAGCAAAACACGCTGATCATCAAGGGAGAAGGGGGGAAAGAATCGGACGATGAGGAGAGCGTCCGGAGGTACAGTAGCAGGATCGATCTCCCGCCAAATCTCTATAAGATCGATCAGATCAAGGCGGAGATTAAGAATGGCGTGCTTAGGGTTTTGGTTCCTAAAGTAAAGGAGGAGGAGAGGAAGGATGTTTTCCAGGTTAAGGTCGGCTGA 645 52.4 MASSIALRRTTASSLLNKFFQPIRSVAVAPSTARSFNTNTQMREVDDEDRSIDIDRRSDQSISSRRDSSPDFFSGNVFDPFSPTRSLSQVLNMMDQFMESPFLATSRGMGAVPKRGWDVKEDDNSLYLRIDMPGLSKDDVKVSVEQNTLIIKGEGGKESDDEESVRRYSSRIDLPPNLYKIDQIKAEIKNGVLRVLVPKVKEEERKDVFQVKVG 214
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00917 214 SUPERFAMILY HSP20-like chaperones 84 206 IPR008978 -
Eupl14g00917 214 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 205 IPR044656 -
Eupl14g00917 214 Gene3D - 73 213 IPR008978 -
Eupl14g00917 214 MobiDBLite consensus disorder prediction 37 75 - -
Eupl14g00917 214 CDD ACD-sHsps-like 118 199 - -
Eupl14g00917 214 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 106 214 IPR002068 -
Eupl14g00917 214 MobiDBLite consensus disorder prediction 41 64 - -
Eupl14g00917 214 Pfam Hsp20-alpha crystallin family 118 213 IPR002068 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00917 K13993 HSP20 family protein
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:13054376 Eupl4g00424 Eupl-Chr4:6760023 dispersed