AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00921 ATGGACGACTCCACTCCATGTGGAATAGTGATGCAACTGAAGATCAACGGGATGAGGACGATTGGTGATGGTCTCAGTAGCAAGGAGGAGCGGGTCCAGCAATGTGAAGGGAGCCTCTATGATGCCAAAGTCAGCAACATCATAGTGAACGGAACTTGGTGCATCCCACCTGCCATCCTTCAGGTCTTTCAACTTGCTGGCCTTCCCATTGATCACCTGCATGGTCTTCCATCATCTGTGGCTGATGTCAGGATATGGAAGCCCACGGTGAAGGCAACTTCTCGGTCCACTCTGCCTTTGAAGCTATTAGGCCTAAGCACCCTACAGTCCGATGGTTTAGATGGGTATGGAACCCCTCCATTCATCCGAGGACTGCTGCCACTGCTTGGAAACTCTTTCATGGAGCCATCCCGATCTTGCTTCCAAGACCCTAAGCATCTGGGATATTCTATGATGGACCGCTTGATCTTGAGTCGCTTTGGACTTCAATATAGTCTTGGTAAAGCCCCATCAATTCGATCCTGCTGGTGGACTCCCCCTCCTTTGGGCGTAGTCAAGCTCAATTGTGATGGAGCTTCTTGTGGTAATCCGGGTCCAGGTGCGCTTGGAGTCATCTTTAGGGACTCCTATGGTACTTTCAAAGGCGCTTTAGCAGCTGGCCTTGGAGAAGTTTCCAACTTCATTGCCGAATGTCAAGCGATTGTCGAAGGGGCCGACCTTGCGCTTTCAAAAGGATGGAATTGTATTTGGATCGAATCTGACTCTGAGGCGATGATAAAGGCTTTCCTTAAGAATGATATTCCTTGGAAGGTCAAGGAAAAATGGGACCGAATCAAATTTTGTTTCCATCGGCTAAGATTGACCTTCACTTGGAGGGAGGTAAACTTTAGCGCTGATCTTTGTGCCAAGCAAGCGATCTCCATGCCGATTGGCTCGCGTATCTGGTGGGTGGAGAGACCTTCTTTTCTGTTGACGGTTGAGAATCCGTTTTTAACCTACTACAGATTTGCGCATTGA 1017 48.87 MDDSTPCGIVMQLKINGMRTIGDGLSSKEERVQQCEGSLYDAKVSNIIVNGTWCIPPAILQVFQLAGLPIDHLHGLPSSVADVRIWKPTVKATSRSTLPLKLLGLSTLQSDGLDGYGTPPFIRGLLPLLGNSFMEPSRSCFQDPKHLGYSMMDRLILSRFGLQYSLGKAPSIRSCWWTPPPLGVVKLNCDGASCGNPGPGALGVIFRDSYGTFKGALAAGLGEVSNFIAECQAIVEGADLALSKGWNCIWIESDSEAMIKAFLKNDIPWKVKEKWDRIKFCFHRLRLTFTWREVNFSADLCAKQAISMPIGSRIWWVERPSFLLTVENPFLTYYRFAH 338
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00921 338 PANTHER OS05G0353850 PROTEIN 163 316 IPR053151 -
Eupl14g00921 338 Pfam Reverse transcriptase-like 188 305 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Eupl14g00921 338 Gene3D - 184 309 IPR036397 GO:0003676(InterPro)
Eupl14g00921 338 SUPERFAMILY Ribonuclease H-like 184 310 IPR012337 -
Eupl14g00921 338 CDD RNase-H-like 187 303 IPR044730 -
Eupl14g00921 338 ProSiteProfiles RNase H type-1 domain profile. 181 311 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00921 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:16711458 Eupl14g00921 Eupl-Chr14:13128346 dispersed
Eupl Eupl-Chr10:21313629 Eupl14g00921 Eupl-Chr14:13128346 dispersed
Eupl Eupl-Chr11:14451619 Eupl14g00921 Eupl-Chr14:13128346 dispersed
Eupl Eupl-Chr11:37610743 Eupl14g00921 Eupl-Chr14:13128346 dispersed
Eupl Eupl-Chr12:23679162 Eupl14g00921 Eupl-Chr14:13128346 dispersed
Eupl Eupl-Chr14:13128346 Eupl1g01917 Eupl-Chr1:41219369 dispersed
Eupl Eupl-Chr14:13128346 Eupl6g01543 Eupl-Chr6:29741590 transposed