AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00943 ATGAACTCATCCATGGATTCCAACCAACTCATTGATTATCTCACCGCTCACATCGCTCTCTACCACTCCTCCACTCGTTCAACCTCTCCATCTCCTCCAAATCCTAGAGCTTCAATACTCCGCTGGTTTTCATCTCTCAACGCCCACCAACGCCAAGCATCTCTCACTATCGTAGATTTAAAATTCACCGAAATTCTCCTCGAAATGCAGACTAAGCTACGTACCCACGGTCATGGTTGTTTCATCATTCTTCCCGATCTCCCCTCTCGCGACCGCCCCTCCCTCCCCAGCCTCTGCTTTCGAAGTTCTAGAGGACTCTTAGCTAGGGCAAGCGCTTCGAACGAGTTCGAACTGTCAATTTATCGTGCTGTTCAGTTATTTGGTTCGAGCGAAGGAGAGCAAATTGATTCTATCACTGTTCGTGAAGGTTTTGTTGGGGATTTGGATCGGTTTGTTGCGGTGATGGATGGGGTTTCAAATGGGGGGTTTCTGCGGGGGGAAGAGAGTGCGTTGGGTTCAACTTGGGAGGAATTGCCGTGGTTGAAGGCAAAGGGGTATTACAGTGTGGAGGCATTTGTGGCAAACAAGCTGGAATTAGCATTGAGGTTGTCGTGGTTGAATTGTAATGGAGGGAAGAGACGAGGAGCGAAGTCGAAAGAGAAGGCAAGTGCTGCGGGTGTGGCAGCAAATGTGTACTGGAGGAAAAAGGGTTGCTTGGATTGGTGGTCTGGGTTGGATCCTGGAGTGAGGAAGAAGATCTTTCGAATAGTTTTAGGCAAAGCGGCCAAATCACTGACAAATGAGATTATGCAAGGAGAAAATAGCGCCTTGAAGGGTGAAATGCGGCTCTTCCGTATGGGAGCAGAGCAGCCAATGAAATACAGCTCTACTGTATCACGTCAGAGGACCGTCCCGTCCGTGTTAGCAGCCGACGCAGAATTTTGCTCGTCCATCAACCTGGATGCAATATCTGGAAAACCTACTTCCTTATCCAATATTTTCAATTGCTTGCTTTTACTTCAGGAGATCTCTGCTATGATATTAGCATTTCAGTGTAGCGAATATGAAAATGAGAAGCTATTTTTCAGTACGTTGGGTTCTATTGATACCATTTCAGATTGGATATTGAGGAAACTTCGACAGTTGCTCATGGTTGTTTCAAGTGATTGTATAAAGCTTGAACTTCTAGGGGGGGATAATTTGAAATCCCCACTGAATAAATCCAAAGAGAAGCTTGGTGTATGTAGCCGGAAAGGAAAGGGGAAGAGTCGTAATCTGAAAAAGCTAAATCCTGTGCCGAAGTCGTCTGGAGCTGATTTGGCAATGGAGAAGCCTCTCGAGGATCATGGATGTGAATTGACCCATAGAGGGACTGCAGATCTATCGAAGGCTAATGGGATGTCTAGTACACTTAAGGAGAAGGATCGTCAAAAGGAACGTGACAAAGGATTGGTTGATGGAAAGGATCAAACTATTGGAAAGAAGAGTAGGAAAGAAAGCACTAGGAGAAAATCCTCGAGCTTCATAGAACCAGTTATGCCTGGAAATTCTGATGTAAAAATCCTACAAGCTACCTCCCAGTCTGTTACTTTTCAAAATGAGATTGCACAATATAGCTGTTTATCTGATTCTCCAACTGTTCACAACATATCAAATGATCTTTCAATTGGTAGTAACAAATTGACACCAAATTCAAGTTCTTGTAATTCTGTCAATAAGCCTAATACAGAGGATACTACTGAAGTGGCCCTAAACACTGAAGAAGATTCTATTGCTGGTTCTACTGAAGGTAGCTTTCATCTTGGAAGTTGCATTGTTTCTTCCAGAGGGGACACTTTAGATTCTAAAATAATACCCTCTGTTATGCCTGTACTTGAACTTGATAATGTTATTTGCAATAAGGAGATTAAGCATCGACACTCTGGACAGTCCAGTGATACTGCTTCACTACCGGTTGTTTCTCCAAAATCAATTGAAGCTGTTGAATCAAATGAAGAAACTGCCCCGTTTCAGAGGCAAAGTGGAAACTATTATGCTCATGGCCCCACAAGTTCCTTGGGATGCGCATCATATGAGTGGCCTAGTGTAGCACCTGTTCATTTCCCATCCGTTAACTCACAGCATCTCCCGGCTGCCACAGATAGATTGCATCTGGATGTTGGTCGCAACTGGCGTAAACACTTCCACCAATCCTTTGTATCCACGAGGCATCAGGCAATAAATCCATCAATTGAAGGTGGGCGCAGCCGAATCATGCCTCGAACTTTGCCAATGAGTTTAGATTGGCCCCCAATGGTAAGAAGTGCTAGTAGATTGACCCCATCCATGGCTTGTAACTATGATTCTGGATTTATCCCAAGGTTGCAGCCTTCGTACCGGCAGGGTTTCACACCTCATGGACTGCAGCTTAATGGAACAATGGCCGAGGATGAAAGGAAATATTCAGGTGATATTATGGACTCATGTGATTTAACGAATGCACCAGAACTAACAGATGATTGCGAAAGCCATTGGATATCAGAAGAAGAATTTGAGGTGCATGCATTTTCAGGAAGAGATTATAACCAGTACTTTGGTGGTGGGGTGATGTACTGGAATACTTCTGATCATGCAGGCACTGGTTTTTCTCGTCCTACTTCTCTTAGCTCTGAGGATAGCTCCTGGGCATGGCATGAAGCAGATTTAAATAGAGCTATTGATGATATGGTTGGCTTCTCTTCTTCCTATAGTACTAATGGTTTGACTTCTCCACCTGCCGCTCCTTTTATTTCTCCATTTGATTCTTTGGGACACCAGGCCCTTGGCTACGTTGTGCCTGGAAACGATTTAACTGGAAAGGTACTCCACCCCTCATCAGTGGTAACAGATGGAGTTCTGGAAGAGAATGTCTCTGGATCTTTGGCCAATTCATCTGGTGGTGTTGTAGAGGGGCAGACTGGAGATTCGCTTCCATACCCCATTTTGCCGCCAATTATCATTCCAAATATGTCGAGAAAGGGATCAAGATCTGATTTCAAGCTTAGTCATGATCATAAAAGTCCCTGTGTCCCTCCTACTAGACGGGAGCAACCTCGGATCAAGCGACCACCATCACCTGTGGTGCTTTGTGTTCCACGAGCTCCATGCCCCCCTCCACCATCTCCTGTTGGTGAATCGAGAAAACGAAGGGGCTTCCCAACTGTGAGATCTGGTAGCTCTAGCCCAAGGCACTGGGGCATGAGAAGTTGGTACCATGATGGAACTAATTGTGATGAAGCTCGCCTTTGTCTGGAAGGCACAGAAGTTATTTGGCCTTCATGGAGAAACAAAGGCCTTTCAGCTACTCCAATGATTCAGCCTCTACCGGGGGCTTTGCTACAAGAACGCTTGATTGCAATTTCCCAACTGGCTCTTGATCAGGAACATCCAGATGTTGCATTTCCTCTGCAACCTCCGGACTTATTGAAATGCCCTGCACATAAGGTGTCTCTTTCTTTGATGCATAGCCTCCTTCATGATGAAATCGATTCTTTTTGCAAGCAGGTCGCTGCTAAGAATTTGATTAGAAAGCCCTATATTAATTGGGCTGTAAAGAGAGTTGCACGGTCTCTCCAAGTCCTATGGCCTCGATCAAGGACAAACATCTTTGGTTCAAACGCAACTGGTTTGTCCCTTCCAACCAGTGATGTGGATCTTGTGGTTTGTCTTCCTCCAGTACGGAATTTGGAACCTATTAAAGAAGCTGGGATTTTGGAGGGACGTAATGGTATAAAAGAAACTTGCCTTCAGCATGCAGCTAGGTACCTTGCCAATCAGGAGTGGGTTAAAAACGATTCTCTTAAGACTGTAGAAAATACAGCTGTACCTATTATAATGCTCGTGGCTGAAGTTCCTCATGATTTTATTATCTCTAGTGGGAAGACTTGCAATGAGCAGGCGCCAAAAGGGGAATCAACCCAGATGACTGGTGAACAAAGCAGTATTGTTCATTCTGATATGGTGGGTTTAGAAAACTCTTCTTGGCCAAAGTGTGCAGGGATGAAAAATGATGATGGCATGGATGTGAAATCGGTTCGTCTGGATATCAGTTTCAAGTCACCCTCACATACAGGACTCCAAACTACAGAATTGGTTAGAGAGCTCGCTGAGCAATTTCCTGCAGCTGCACCCCTCGCTTTGGTGCTAAAACAGTTCCTGGCAGATCGAAGCCTGGACCACTCCTACTCAGGTGGCTTAAGTTCATATTGTTTGGTTTTGTTGATTGCACGGTTTCTTCAGCATGAACACCATCTTGGCTGGCCTATTAACCAAAATCTTGGAAGCCTTTTGATGGATTTTCTTTACTTCTTTGGGAATGTGTTTGATCCACGCCAAATGCGTATTTCAATCCAAGGAAGTGGAATTTATGTAAAAAGAGAGAGAGGACATAGCATTGATCCAATTCACATTGATGATCCTCTTTTTCCAACAAATAACGTCGGGAGGAATTGCTTTCGCATACATCAATGTATCAAGGCTTTTGCAGATGCTTACTCTCTTCTGGAGAATGAACTTACATGCCTTCCTAGTGGTGATCCAAGTTCAAGGCCACTTTATAGACTACTTCCTAAAATTATCCCAAGTATCGATCATGTGTAG 4617 44.49 MNSSMDSNQLIDYLTAHIALYHSSTRSTSPSPPNPRASILRWFSSLNAHQRQASLTIVDLKFTEILLEMQTKLRTHGHGCFIILPDLPSRDRPSLPSLCFRSSRGLLARASASNEFELSIYRAVQLFGSSEGEQIDSITVREGFVGDLDRFVAVMDGVSNGGFLRGEESALGSTWEELPWLKAKGYYSVEAFVANKLELALRLSWLNCNGGKRRGAKSKEKASAAGVAANVYWRKKGCLDWWSGLDPGVRKKIFRIVLGKAAKSLTNEIMQGENSALKGEMRLFRMGAEQPMKYSSTVSRQRTVPSVLAADAEFCSSINLDAISGKPTSLSNIFNCLLLLQEISAMILAFQCSEYENEKLFFSTLGSIDTISDWILRKLRQLLMVVSSDCIKLELLGGDNLKSPLNKSKEKLGVCSRKGKGKSRNLKKLNPVPKSSGADLAMEKPLEDHGCELTHRGTADLSKANGMSSTLKEKDRQKERDKGLVDGKDQTIGKKSRKESTRRKSSSFIEPVMPGNSDVKILQATSQSVTFQNEIAQYSCLSDSPTVHNISNDLSIGSNKLTPNSSSCNSVNKPNTEDTTEVALNTEEDSIAGSTEGSFHLGSCIVSSRGDTLDSKIIPSVMPVLELDNVICNKEIKHRHSGQSSDTASLPVVSPKSIEAVESNEETAPFQRQSGNYYAHGPTSSLGCASYEWPSVAPVHFPSVNSQHLPAATDRLHLDVGRNWRKHFHQSFVSTRHQAINPSIEGGRSRIMPRTLPMSLDWPPMVRSASRLTPSMACNYDSGFIPRLQPSYRQGFTPHGLQLNGTMAEDERKYSGDIMDSCDLTNAPELTDDCESHWISEEEFEVHAFSGRDYNQYFGGGVMYWNTSDHAGTGFSRPTSLSSEDSSWAWHEADLNRAIDDMVGFSSSYSTNGLTSPPAAPFISPFDSLGHQALGYVVPGNDLTGKVLHPSSVVTDGVLEENVSGSLANSSGGVVEGQTGDSLPYPILPPIIIPNMSRKGSRSDFKLSHDHKSPCVPPTRREQPRIKRPPSPVVLCVPRAPCPPPPSPVGESRKRRGFPTVRSGSSSPRHWGMRSWYHDGTNCDEARLCLEGTEVIWPSWRNKGLSATPMIQPLPGALLQERLIAISQLALDQEHPDVAFPLQPPDLLKCPAHKVSLSLMHSLLHDEIDSFCKQVAAKNLIRKPYINWAVKRVARSLQVLWPRSRTNIFGSNATGLSLPTSDVDLVVCLPPVRNLEPIKEAGILEGRNGIKETCLQHAARYLANQEWVKNDSLKTVENTAVPIIMLVAEVPHDFIISSGKTCNEQAPKGESTQMTGEQSSIVHSDMVGLENSSWPKCAGMKNDDGMDVKSVRLDISFKSPSHTGLQTTELVRELAEQFPAAAPLALVLKQFLADRSLDHSYSGGLSSYCLVLLIARFLQHEHHLGWPINQNLGSLLMDFLYFFGNVFDPRQMRISIQGSGIYVKRERGHSIDPIHIDDPLFPTNNVGRNCFRIHQCIKAFADAYSLLENELTCLPSGDPSSRPLYRLLPKIIPSIDHV 1538
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00943 1538 MobiDBLite consensus disorder prediction 1002 1027 - -
Eupl14g00943 1538 Gene3D Beta Polymerase, domain 2 1177 1288 IPR043519 -
Eupl14g00943 1538 SUPERFAMILY PAP-OAS1 substrate-binding domain 1379 1512 - -
Eupl14g00943 1538 Pfam Poly(A) RNA polymerase, mitochondrial-like, central palm domain 1189 1287 IPR054708 -
Eupl14g00943 1538 MobiDBLite consensus disorder prediction 999 1066 - -
Eupl14g00943 1538 SUPERFAMILY Nucleotidyltransferase 1164 1376 IPR043519 -
Eupl14g00943 1538 MobiDBLite consensus disorder prediction 469 496 - -
Eupl14g00943 1538 Pfam Cid1 family poly A polymerase 1431 1484 IPR002058 -
Eupl14g00943 1538 MobiDBLite consensus disorder prediction 1034 1050 - -
Eupl14g00943 1538 PANTHER POLY(A) RNA POLYMERASE 259 1537 IPR045862 GO:0003729(PANTHER)|GO:0004652(PANTHER)|GO:0005730(PANTHER)|GO:0031123(PANTHER)|GO:0031499(PANTHER)|GO:1990817(InterPro)
Eupl14g00943 1538 MobiDBLite consensus disorder prediction 416 440 - -
Eupl14g00943 1538 MobiDBLite consensus disorder prediction 456 508 - -
Eupl14g00943 1538 Gene3D - 1340 1532 - -
Eupl14g00943 1538 Gene3D - 1160 1176 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00943 K03514 non-canonical poly(A) RNA polymerase PAPD5/7 [EC:2.7.7.19]