AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00948 ATGGAGAACAGTCACAGTCGCCGGAATCAAACTATCGGAATATATCCCTCACCTCGTCTACTAAGAAGCAAAAGTGGAACTCCGAACATGTCAGCACCACCAGAGATTCCTCCGTTGACAACGAATTCCATCCGCAGTTCCATCCCTAGATCGAAATCCACGACAAGAACAACTAGAATCAACAAAGACGAGGAGAATCGCGATAATAATCTCGTCGGAATCTTACGGAGTCACCGGAATTCTGACTCGGGCAAAGCCGTTGAGATAGCGAAAACAAAGAGAACGAGATCGGTATCCAATTCTCCTTCGGCTTGGGCGTTATCTCCAGGTCGGTCTCCTCCACCTTCAATTTCTCCGAAGCTGGATTCACGGGGAGCGAAGCCGAAATCAGGTGGAATGAGTGGCGTTTTGAGATATTTTCGGCCGAATAAGGTGTCGCCGGTTCAAGAAGAAGCGTTTCATCGGTTTCGTGTTTTACATACGAGATTGGTGCAATGGAGGGTGGTGAATGCTCGAGCTGAGACTGCAATGGTCACCGGAAAGTCAGTTGCAGAGGAAAAGCTGTTCAATGTTTGGTTAAAAATTTTCCGCTTGCGAAATTCAGTGGTAGAAAAGCGAATTCAAGTGCAAAAACTCAAACAAGAGATTAAACTACTTCGAATCCTTATTCCTGAAATTCGTCTACTTAGCGAATGGGCCAAAATCGAAAAAATAAATTCAGAAGCTGTAGCAAAACTAACAAGAAATTTATCAGCGTTATCGATCAGACTTCCCTTAGTCAAAGGTGCCAAGGTAATACATCCCGTAGATATGATGAACGTACCCCCATATATTTGCTTCATGTTTTATCTAATTCTAGTTTTGTATGAATTTAAGGCGGATATGATTTCAGTTTATAAAGCGATGCGTATGGCGATGGATGTCATGAACCATATTGAAACATCGATCACAGAAATCTTCTTTCAGGTTGAGGAAGAAGGTTCATTGCTCGAAGAGCTCACGAAGACAATAATACAAGAAAGAGAGAGCTTAGAGGAATTGAGGAAGACAATTGCAATGGTTGCTTCATTGGAGGTCCAGGAGGAAAGCTTAAGTGTGTATCTCATTCAAGCAGCGAAGGAGAGAGTGGTTGTCGTAAGATTGCCCTTGTACTTGATTTATCAAGGGAAGAATATTAGGCATAGACCGGATGGCAGCGACGAGGGCAAGATCTCCAACAGCGATAATGACGATTCCACCAGTAGCGACGATGCCGAGATCACCGGCAATGGCAAAGGAGATTAG 1284 43.85 MENSHSRRNQTIGIYPSPRLLRSKSGTPNMSAPPEIPPLTTNSIRSSIPRSKSTTRTTRINKDEENRDNNLVGILRSHRNSDSGKAVEIAKTKRTRSVSNSPSAWALSPGRSPPPSISPKLDSRGAKPKSGGMSGVLRYFRPNKVSPVQEEAFHRFRVLHTRLVQWRVVNARAETAMVTGKSVAEEKLFNVWLKIFRLRNSVVEKRIQVQKLKQEIKLLRILIPEIRLLSEWAKIEKINSEAVAKLTRNLSALSIRLPLVKGAKVIHPVDMMNVPPYICFMFYLILVLYEFKADMISVYKAMRMAMDVMNHIETSITEIFFQVEEEGSLLEELTKTIIQERESLEELRKTIAMVASLEVQEESLSVYLIQAAKERVVVVRLPLYLIYQGKNIRHRPDGSDEGKISNSDNDDSTSSDDAEITGNGKGD 427
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00948 427 MobiDBLite consensus disorder prediction 396 427 - -
Eupl14g00948 427 MobiDBLite consensus disorder prediction 93 107 - -
Eupl14g00948 427 MobiDBLite consensus disorder prediction 1 135 - -
Eupl14g00948 427 Pfam QWRF family 51 265 IPR007573 -
Eupl14g00948 427 Pfam QWRF family 291 345 IPR007573 -
Eupl14g00948 427 PANTHER AUGMIN FAMILY MEMBER 27 373 - GO:0005737(PANTHER)|GO:0005813(PANTHER)|GO:0005880(PANTHER)|GO:0007098(PANTHER)|GO:0008017(PANTHER)|GO:0051225(PANTHER)
Eupl14g00948 427 Coils Coil 330 350 - -
Eupl14g00948 427 MobiDBLite consensus disorder prediction 22 55 - -
Eupl14g00948 427 Coils Coil 202 222 - -
Eupl14g00948 427 MobiDBLite consensus disorder prediction 56 72 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00948 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:13815109 Eupl6g00785 Eupl-Chr6:12684188 dispersed