AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00953 ATGTCTCGGACGGGCGTTGCTCTCAGCAAAGGCTTCTCGACTCGACCTATAACTGTTTTGGAGTTGCGAGGGCAGAAACTTGAGCTTCGACTTCTCGAAATCGCTGAACGAGAGGAGGCTGATGAATTTATAATCGGGCTCCCTATATCTGGTGATGGGAAGGAGACGCCACAGTCGAACAAAGTTCGTAGTGTTGCCGGAAGGCTCGCCGTTAGAGCCGCAGAGAGGGGTTGGAGAGTATACCTGCAGGATGAACATGGGACATCAACAGAGGCCCTTGATTACATGATTGATATGGGCCTCAACAAATCTGCTCGCCAAGGAAAAATTGATGCATATGCTGCCATGGAACTGAACTTGTTCTTCCCAGGCAGTTGGAACTTCAAGAAAAACTTCGACAAGGTCCACCCAAGGACTTGGATTTTTTCCCAGAAGAACTTCAGGGCTGACAACGTATTGCTGATCCAAGAAGCAGTTGGAACTTCAAAAGGAACTTCAACAAGGTCCACCCAAGGACTTGGAATTTTCCCCAGAAGAACTTGA 543 48.25 MSRTGVALSKGFSTRPITVLELRGQKLELRLLEIAEREEADEFIIGLPISGDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTSTEALDYMIDMGLNKSARQGKIDAYAAMELNLFFPGSWNFKKNFDKVHPRTWIFSQKNFRADNVLLIQEAVGTSKGTSTRSTQGLGIFPRRT 180
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00953 180 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 2 118 IPR005227 GO:0000967(PANTHER)|GO:0006364(InterPro)
Eupl14g00953 180 Gene3D - 1 121 IPR037027 GO:0006139(InterPro)
Eupl14g00953 180 SMART rnase-8s 1 92 IPR006641 GO:0006139(InterPro)
Eupl14g00953 180 Pfam Holliday junction resolvase 2 116 IPR005227 GO:0006364(InterPro)
Eupl14g00953 180 CDD YqgF 3 116 IPR005227 GO:0006364(InterPro)
Eupl14g00953 180 SUPERFAMILY Ribonuclease H-like 2 117 IPR012337 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00953 K07447 putative pre-16S rRNA nuclease [EC:3.1.-.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:13861341 Eupl14g00953 Eupl-Chr14:13883927 proximal