AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00957 ATGGCTGCTGCTTTAGCTCCTGCTTCTTCTCTCCGCTTCAGTCCCCATTCAGCCGCTCGCTTTCTCTATCTCTACAACACCAGAAACCCTAGAAACGTTCTAGCAAGATTCAAAACCCTAACGAACCTTACTCCTCTCCCGCCATTTCTCCACTGCTACCCTCGTTTTCACCACTTCTCCCGCGCTCGTACCGACATCTCTACATCCAGTCAGAGGTGTTTCTGCAGTGTAATCACCGGAGCTCTATCATCTGGTGAGGCGGTTGAAAAGGCGAAATCGGAATTGCTCGAAAAACCTAATGTTGAAACTGGTGAAAAGGTTCGGGAGTTCCGGAAGCGATTGAGGATCGCCGATGTAAAGGGTGGGCCCGACGAAGGGTTGGATCGATTAGGGCAGACACTCGTCGTGAAGGGCTGGGTTCGGACGCTCCGAGTGCAGAGCAGCGTTACGTTTCTTGAGGTAAACGATGGTTCATGCCTTTCCAACATGCAATGCGTGATGAACTCAGACGCTGAAGGCTATGATCAGGTGGAATCTGGCTTCATCACAACTGGTGCATCTGTGTGGATAGAGGGGACTTTAGTTAGTAGTCAAGGAACTAAGCAGAAAGTCGAATTGAAGGTTGCAAAAGTTGTCACGGTTGGGAGGAGTGATCCTTCCTTTCCCATTCAAAAGAAAAGAGTAAGCAGAGAATTTTTGAGAACCAAAGCGCATCTTCGTCCTCGAACAAACACATTTGGCGCGGTTGCAAGAGTGAGGAATGCGTTGGCATATGCTACTCACAAGTTTTTCCAAGAAAGTGGGTTTGTTTGGGTTTCAAGCCCAATTATTACTGCTTCAGATTGTGAAGGAGCTGGTGAACAGTTCTGTGTAACTACATTGATTCCAAGCTCCCTAGAAAATACAAATTCACCAGTTGGTACCATTCCTACGAATGCGGATGGTTTAATTGATTGGTCACAGGATTTTTTTGGAAAACCAGCGTTCTTGACAGTCTCGGGCCAACTTAATGCTGAAACATATGCTTCTGCTCTTTCTGATGTATACACATTCGGTCCAACTTTTCGGGCTGAGAACTCTAATACTTCTAGGCATTTAGCTGAATTCTGGATGATTGAACCAGAACTTGCTTTTGCTGATCTGAATGATGACATGGCATGTGCAACTGCCTATCTCCAGTATGTAGTAAGGTATGTCCTCGAGAACTGCAAAGAAGACATGGATTTCTTCAATACTTGGATTGAGAAAGGAATTATCAATAGATTGAATGATGTAGCTGAGAAGGACTTTGTGCAATTGACATACACTGATGCTGTCGAACTTCTGATGAGAGCAAATAAGAAATTTGAGTTCCCGGTAAAATGGGGATGCGATTTGCAGAGCGAGCATGAGCGGTACATCACTGAAGATGTCTTTGCTGGCACTCCTGTAATAATCAGGGACTATCCGAAGGAAATAAAGGCATTCTATATGCGCGAAAATGAGGATGGGAAGACTGTGGCAGCCATGGATCTGTTGGTTCCTCGGGTTGGTGAACTCATTGGTGGAAGCCAACGTGAAGAACGCCTTGACCATCTGGAAGTTCGTTTAGATGAGTTAAAGCTCAATAAGGAAAGCTATTGGTGGTACCTTGATCTGCGTCGTTTTGGTTCAGTTCCTCATGCGGGCTTTGGATTGGGCTTCGAAAGGCTTGTGCAGTTTGCCACAGGAATAGAAAACATAAGGGATGCAATACCTTTCCCCCGGACTCCTGGTTCTGCCGACTTTTGA 1770 45.88 MAAALAPASSLRFSPHSAARFLYLYNTRNPRNVLARFKTLTNLTPLPPFLHCYPRFHHFSRARTDISTSSQRCFCSVITGALSSGEAVEKAKSELLEKPNVETGEKVREFRKRLRIADVKGGPDEGLDRLGQTLVVKGWVRTLRVQSSVTFLEVNDGSCLSNMQCVMNSDAEGYDQVESGFITTGASVWIEGTLVSSQGTKQKVELKVAKVVTVGRSDPSFPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQESGFVWVSSPIITASDCEGAGEQFCVTTLIPSSLENTNSPVGTIPTNADGLIDWSQDFFGKPAFLTVSGQLNAETYASALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRYVLENCKEDMDFFNTWIEKGIINRLNDVAEKDFVQLTYTDAVELLMRANKKFEFPVKWGCDLQSEHERYITEDVFAGTPVIIRDYPKEIKAFYMRENEDGKTVAAMDLLVPRVGELIGGSQREERLDHLEVRLDELKLNKESYWWYLDLRRFGSVPHAGFGLGFERLVQFATGIENIRDAIPFPRTPGSADF 589
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00957 589 Gene3D - 109 219 IPR012340 -
Eupl14g00957 589 SUPERFAMILY Nucleic acid-binding proteins 129 218 IPR012340 -
Eupl14g00957 589 Hamap Asparagine--tRNA ligase [asnS]. 119 589 IPR004522 GO:0000166(InterPro)|GO:0004816(InterPro)|GO:0005524(InterPro)|GO:0006421(InterPro)
Eupl14g00957 589 PANTHER ASPARTYL-LYSYL-TRNA SYNTHETASE 91 588 - GO:0004816(PANTHER)|GO:0005739(PANTHER)|GO:0006421(PANTHER)
Eupl14g00957 589 Pfam OB-fold nucleic acid binding domain 135 211 IPR004365 GO:0003676(InterPro)
Eupl14g00957 589 PRINTS Aspartyl-tRNA synthetase signature 346 359 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Eupl14g00957 589 PRINTS Aspartyl-tRNA synthetase signature 330 342 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Eupl14g00957 589 PRINTS Aspartyl-tRNA synthetase signature 504 520 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Eupl14g00957 589 PRINTS Aspartyl-tRNA synthetase signature 544 558 IPR002312 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Eupl14g00957 589 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 251 579 IPR006195 -
Eupl14g00957 589 NCBIfam asparagine--tRNA ligase 130 589 IPR004522 GO:0000166(InterPro)|GO:0004816(InterPro)|GO:0005524(InterPro)|GO:0006421(InterPro)
Eupl14g00957 589 SUPERFAMILY Class II aaRS and biotin synthetases 218 588 IPR045864 -
Eupl14g00957 589 Pfam tRNA synthetases class II (D, K and N) 231 583 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Eupl14g00957 589 FunFam Asparagine--tRNA ligase 222 588 - -
Eupl14g00957 589 Coils Coil 516 536 - -
Eupl14g00957 589 CDD AsxRS-core 227 585 - -
Eupl14g00957 589 Gene3D Bira Bifunctional Protein; Domain 2 222 587 IPR045864 -
Eupl14g00957 589 CDD EcAsnRS-like-N 133 215 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00957 K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:13950345 Eupl9g00305 Eupl-Chr9:8911000 dispersed
Eupl Eupl-Chr14:13950345 Eupl10g01027 Eupl-Chr10:30074223 transposed
Eupl Eupl-Chr14:13950345 Eupl10g01003 Eupl-Chr10:29803751 transposed