AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00969 ATGGAGGTATGCTATGATAGGGCAGCAAGAGGGCATGTACGAGCAGGAAGCTGCATGGAGTGCATGATGGGTTGTGCCAGCAGATTAGATGGTGGAGATAACTACCTGCATGTGTGGAGATTAAACCGTTGGGCAGTAAGTGGAGGGACCATCGTAGAGTTCAGATCTGGCCGTGGATGGAGAAGAGCTTTACTGGCGTTAATGGTGGAAGCCGATGAAGGTATAGACCGAAGGGGGTTACAGACGATTGATTTGAAGGATGAATGGAAGAATCTAACGGTCAGGGTCCTAGATGGAATGGAGAGTGGTGATTGGTTAAGGCCTAGTGCCTCTGCTTCTTTCTTAAGAGAACTACTTATTGTTGATTTGGCAGAATTCAATTGTTTTCGTATTGTCCTTTGTGTGAGATCGGCTTCGGTGGTCCGTGTTCTTTGGTTCCAGATCAACTCGGGCAAAAAATCGAAGAAATATATGAGGAACACAGTTAAAGACCTTATCATTCTCAAGAATCTTGGGATGGGTACTAAACCAAGGAAAGCTCCAGCTATTCTAGAGTGCAGATGGAAAGCACTGGGAAGAGGGGTTATTAAATTGAATTGTGATGGTGCAGCTAAAGGTAATCCAGGTATGGGAGGTATTGGAGTCACATTCAGAGATTCTAATGGAAATATTGTTGGAGTATTAGTTGAGAACCTCGGGGTTGTCACTAATCACATGGCGGAATGCTGTGCTATTTGCTATGGTGCTAAATGTGCAGTAGACAAGGGTAGGACTAAAATTTGGGTGGAATCGAATTCAGAAGCAGCTATCAAATCTTTTCTAAGTGGAGACATTCCTTGGAAGATTAAAGGTTTGTGGGATTTAATCAAACCGAAATTGGAATGGATTTGTTTAACATCAACATGGAGGGAAACTAATTTTAGTGCGGATAAGTGTGCTAACAAGGCTTGCCGACTTCCTATTGGTCATAAGAAATGGTGGGACCAAAGGCCGAAATTCTTGAGTTGTATTGAGGACCCTTTGAGGTCTTATTATCGTTTTGTATCTTGA 1050 43.05 MEVCYDRAARGHVRAGSCMECMMGCASRLDGGDNYLHVWRLNRWAVSGGTIVEFRSGRGWRRALLALMVEADEGIDRRGLQTIDLKDEWKNLTVRVLDGMESGDWLRPSASASFLRELLIVDLAEFNCFRIVLCVRSASVVRVLWFQINSGKKSKKYMRNTVKDLIILKNLGMGTKPRKAPAILECRWKALGRGVIKLNCDGAAKGNPGMGGIGVTFRDSNGNIVGVLVENLGVVTNHMAECCAICYGAKCAVDKGRTKIWVESNSEAAIKSFLSGDIPWKIKGLWDLIKPKLEWICLTSTWRETNFSADKCANKACRLPIGHKKWWDQRPKFLSCIEDPLRSYYRFVS 349
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00969 349 Pfam Reverse transcriptase-like 199 316 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Eupl14g00969 349 PANTHER OS05G0353850 PROTEIN 164 338 IPR053151 -
Eupl14g00969 349 CDD RNase-H-like 198 314 IPR044730 -
Eupl14g00969 349 Gene3D - 195 319 IPR036397 GO:0003676(InterPro)
Eupl14g00969 349 SUPERFAMILY Ribonuclease H-like 195 321 IPR012337 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00969 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:14355653 Eupl9g01449 Eupl-Chr9:29932518 dispersed
Eupl Eupl-Chr11:37610743 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr12:2714859 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr12:5424582 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr14:30690811 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr1:14421240 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr3:30831466 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr6:3536109 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr6:30345547 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr11:13655311 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr8:34805197 Eupl14g00969 Eupl-Chr14:14355653 transposed
Eupl Eupl-Chr14:86110 Eupl14g00969 Eupl-Chr14:14355653 wgd