AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00970 ATGATTTTGAAGAAATTAAAGGGAAAATCTATTGGTCAGGGTAGAGCGAAGAAGGTCGTCATTTCGGCCCCTATCAAGGATGCTCCCATTTTTGTTGTGGGTGTCAATGAAAAGGAATACAAGCCGGACATCAACATTGTATCAAATGCTAGCTGCACCACCAACTATCTTGCTCCCGCTGCCACACTTGTCATCAATGACAGATTTGGCATTGTTGAGGGTCTCATGACCATTGTCTACTCCACAGCCAGCTCAAACCACTATGGTGGCACTTTCCAAAATACACAAGGTCTCATCTTTGTTGTTGACAGCAATGACAGGGACCATGTGGCTGAGGCAAGGGATGAGCTCCACAGGATGCTGAATGAGGATGAGTTACGAGATGCTGTGTTGCTCGTTTTTGCAAATACGCAAGATCTACCAAATGCAATGAATGCTGTTGAAATTACTGATAAGCTGGGATTGCATTACTTGTGTCAGAGACATTGGTTGAGGGGATCCAGACAGTGGTGGTGCATTGTAGCGTTTGGAGGAGGAAGAGGCAGTGCTAGGCAGTTTTTAAAGGGAGCAGCGGTGATGAGAGTGACGCCCAGCAACTGGTTGAAGACCATGAACCAGGATGCCGATGAGGCCCTTGGGAGCCTAACGTCCAAGCTTGTTCAAGGAACTCAGAAGTGCATACGGGTTCACCAAGGCTTATGTTTATTGGGTGGCATGACTTTCATCCTACTGCAATTCAATGTTCTTATGCCATTTACTTATAGATTTTGA 771 45.78 MILKKLKGKSIGQGRAKKVVISAPIKDAPIFVVGVNEKEYKPDINIVSNASCTTNYLAPAATLVINDRFGIVEGLMTIVYSTASSNHYGGTFQNTQGLIFVVDSNDRDHVAEARDELHRMLNEDELRDAVLLVFANTQDLPNAMNAVEITDKLGLHYLCQRHWLRGSRQWWCIVAFGGGRGSARQFLKGAAVMRVTPSNWLKTMNQDADEALGSLTSKLVQGTQKCIRVHQGLCLLGGMTFILLQFNVLMPFTYRF 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00970 256 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 12 85 IPR020831 GO:0004365(PANTHER)|GO:0005829(PANTHER)|GO:0006096(PANTHER)|GO:0016620(InterPro)
Eupl14g00970 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 163 IPR027417 -
Eupl14g00970 256 FunFam ADP-ribosylation factor 1 82 178 - -
Eupl14g00970 256 Pfam ADP-ribosylation factor family 92 163 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl14g00970 256 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 50 57 IPR020830 GO:0016620(InterPro)
Eupl14g00970 256 Gene3D - 2 68 - -
Eupl14g00970 256 SMART arf-sub-2 11 195 - -
Eupl14g00970 256 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 74 90 IPR020831 GO:0016620(InterPro)
Eupl14g00970 256 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 46 64 IPR020831 GO:0016620(InterPro)
Eupl14g00970 256 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 11 24 IPR020831 GO:0016620(InterPro)
Eupl14g00970 256 Gene3D - 85 221 IPR027417 -
Eupl14g00970 256 ProSiteProfiles small GTPase Arf family profile. 1 208 - -
Eupl14g00970 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 65 IPR036291 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00970 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:14378578 Eupl5g00323 Eupl-Chr5:9474804 dispersed
Eupl Eupl-Chr14:14378578 Eupl4g00674 Eupl-Chr4:10222956 transposed
Eupl Eupl-Chr14:14378578 Eupl12g01296 Eupl-Chr12:29620101 transposed