AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00975 ATGCCCTACTCACCAGAGAGAAACCCTAGACCGCAATTGAAGAGGCCTCCGAGCTGGCCAGACCTCTGGTTCAAAGGAAAAGCTCTCAAGCATGTGGTTTTCAAGATGCAGCTCGATTCTCTCACCACCGCAACACCAGAGAGACCAACACCAGCACCCCAACAGAAAGAAACCATAACCCTAGATGATTCTCCGGGGACCAACCTGACTTCTCTCTTATCTGACGAGCTTCTTCTTCGGATCTTCTCCAAGCTCCCAGACTCGCAACGAAACCCTAATTCGCTCGTATGCAAGCGATGGATGATTCTGCAAGGTCGTCTGGTTCGCTCCGTCAAGCTCCTCGACTGGTTTTTTCTCGAATCAGGTCGGCTTCTTTCTCGGTTCCCTAATCTCACTGACGTTGATCTCGTTCGCGCCTGTATTGAGTCGCCGAAGAATTCCGGAATCTTGTTGACTAATCGTTTAATCACGCTTCATCTCGATTCTGATTACTTGGTGGGTCCCTTTATCCGTGAGGACAATTTGCTGCCGTTGGATTCGATTGATCGAGGTCTACGAATTCTCGCCCGTGGATGCCCTAATTTACGGAAACTTGTTCTCATTGCTGCTACGGAGAAGGGGCTTTCGAGTGTCGCCGAAGAGTGTCCGACGTTGCAGGAATTGGAGCTGCACCGGTGCACGGATCTCTCCTTACGTGGGATATCTGCTTGCCAGAATTTACAGATCTTGAAATTGGTTGGCATTGTTGATGGATTTTACGGTACAGTGATTTCGGATATTGGATTGACGATCTTGGCGCACGGATGTAAACGGCTGGTAAAGCTCGAGTTGAGCGGGTGCGAGGGTAGTTATGATGGGATTAGAGCAATTGGCCAATGCTGCCACATGCTGGAGGAGCTCACACTTTGCAACCACATGATGGATGAGGGGTGGATGGCTGGGTTGTCATTCTGTGGAAATTTGAAGACTTTGAAGCTTCAGTCATGCAAGAGGATCGATCTAAATCCTGGGCCAGTCGAGCATTTGGGGTCTTGCCCAACTCTTGAAGGGTTGCATCTGCAGCGGTGCCAATTGCGCAATAAGCAGAGTATGGCTGCATTGTTTCAGGTGTGCAGCGCTGTTAGGGAGATTGTTTTTCAGGACTGTTGGGGATTGGACAATGAAATTTTTGGCGTTGCAAGTACTTGCAGGAGGGTAAAGATTATATCCTTGGAAGGATGCTCGTTGCTAACAACAGAAGGTCTTGAGTCAGTAATTCTTTCTTGGGTGGAACTTCAAAGGCTTAGAGTAGTCTCATGTAACAATATAAGGGACAGTGAAGTCACTCCTGCATTATCAAGTTTGTTTTCTGTCCTTAAAGAGTTGAAATGGCGACCAGATTCCAGATCTGTTCTCTCATCAAGTCTTGCAGGGACTGGAGTGGGAAAGAAAGGTGGTAGATTTTTTAAGAGGGTTTGA 1458 47.94 MPYSPERNPRPQLKRPPSWPDLWFKGKALKHVVFKMQLDSLTTATPERPTPAPQQKETITLDDSPGTNLTSLLSDELLLRIFSKLPDSQRNPNSLVCKRWMILQGRLVRSVKLLDWFFLESGRLLSRFPNLTDVDLVRACIESPKNSGILLTNRLITLHLDSDYLVGPFIREDNLLPLDSIDRGLRILARGCPNLRKLVLIAATEKGLSSVAEECPTLQELELHRCTDLSLRGISACQNLQILKLVGIVDGFYGTVISDIGLTILAHGCKRLVKLELSGCEGSYDGIRAIGQCCHMLEELTLCNHMMDEGWMAGLSFCGNLKTLKLQSCKRIDLNPGPVEHLGSCPTLEGLHLQRCQLRNKQSMAALFQVCSAVREIVFQDCWGLDNEIFGVASTCRRVKIISLEGCSLLTTEGLESVILSWVELQRLRVVSCNNIRDSEVTPALSSLFSVLKELKWRPDSRSVLSSSLAGTGVGKKGGRFFKRV 485
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00975 485 MobiDBLite consensus disorder prediction 42 64 - -
Eupl14g00975 485 Gene3D - 69 105 - -
Eupl14g00975 485 Gene3D Ribonuclease Inhibitor 106 249 IPR032675 -
Eupl14g00975 485 PANTHER UNCHARACTERIZED 71 455 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Eupl14g00975 485 SMART LRR-CC-2 345 370 IPR006553 -
Eupl14g00975 485 SMART LRR-CC-2 269 293 IPR006553 -
Eupl14g00975 485 SMART LRR-CC-2 215 240 IPR006553 -
Eupl14g00975 485 SMART LRR-CC-2 396 421 IPR006553 -
Eupl14g00975 485 SUPERFAMILY RNI-like 254 455 - -
Eupl14g00975 485 SUPERFAMILY RNI-like 112 247 - -
Eupl14g00975 485 FunFam F-box protein At5g51380 67 333 - -
Eupl14g00975 485 SUPERFAMILY F-box domain 64 125 IPR036047 GO:0005515(InterPro)
Eupl14g00975 485 Gene3D Ribonuclease Inhibitor 251 336 IPR032675 -
Eupl14g00975 485 Gene3D Ribonuclease Inhibitor 340 468 IPR032675 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00975 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr13:9581915 Eupl14g00975 Eupl-Chr14:14516823 dispersed
Eupl Eupl-Chr14:14516823 Eupl14g00977 Eupl-Chr14:14546350 proximal
Eupl Eupl-Chr5:49497089 Eupl14g00975 Eupl-Chr14:14516823 transposed
Eupl Eupl-Chr14:245969 Eupl14g00975 Eupl-Chr14:14516823 wgd
Eupl Eupl-Chr14:14516823 Eupl14g01077 Eupl-Chr14:18736821 wgd