AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00981 ATGCTTCCTTTCTCTTCAACCGTTTCGAACCAGATTCGGTTCTTGCTTCAGAGCTGGAACGAATCCAACTTCGACTCTGTCTTTTACGAGCTATGTCAGTTTGTCGACTATGGAAGTGAGGGAAGCATTTTACTGCTCCAAACCTGCTTGGATCACATGAATTTTCATGGTGGAGATATGCAAAGCAGGCAGCTGAAACCAGATTTTCTTGCTGCCATTTTTAGATATTTGTTGGATAAACCAAACTTCAGCACAGTGTTTTGCGAAGCACTTAGCCTTGCTTTGTTAATCAATGAAGGATTTCTCAGAGATCTCTCCAAGGAGCTACACTTGTCGGTGTCTGAGAAAATTGGCATTGGCCTTGCTTTGTCAGACTCAGAAAATCTCGACATCAGAATGAGTGGGCAAAACTTCTGCATTGCTCAGATTGAGGAATTGTTTGCCAATCCTGCTTCTATTGATTCTCACGAGCAAATTCAGAATATTGCTATATTCCTCTATCGGTCAGAGGGTCTTGCGAAGCACGTTGATTCCTTTATGCAAATGTTGTCTCTATTGCAGCAGAAACAGACAACTCCATTTATATTAGCTCCATTGCTTTCGGATGATTTGTGCGAGGCCAACTCTTTGAGGAATTTGGATTTATTCTATGAATGCAGCGAAAATGATTTTGATGCCGTTTTAGCGGAGATAGAGAAGGAAATTAGCATGGCTGATATCATGAAGGAACTGGGCTATGGTTGCACAGCTAATGCTTCACATTGCAAAGAGATGTTATCACTTTTCTTACCTCTGACTGACGTCACTCTTGCTCGGATACTTGGCACAATTGCTCGCACCCATGTTGGTCTTGAGGATGTTAACAACACATATTCAACATTCTGCTCTGCTCTTGGTAGCAGCAGTTCATCCGCGGATTTGTCATGGCTGAGCTCTTGGAATGTTGATGTCCTTGTAGATTCAATTAAGCAACTTGCTCCCGATACTGATTGGATACATGTTATGGAAAACCTGGATCACGAGGGGTTCTACTTTCCCAACGAGGAGGCATTTTCTTTTTTCATGTCTGTTTATGCTAATGCATGCCGGGATCCTTTCCCACTCCATGCCATATGTGGGTCTGTCTGGAAAAATGCTGAAGGTCAGCTATCTTTTCTAAGATATGCTGTTTCAGCTCCACCTGAAATATATACCTTCTCACATTCTGTGAGGCAACTGGCATATGTTGATGAAGTGCATGGTCATAAGCTTCCACATGGACATCTAAATCAGGCTTGGTTGTGTCTTGATCTTTTGGAGGTGTTATGTCAGCTAGCTGAGAGTGGCCATGCTGGTTCTGTACGATCAATGCTTGAGTATCCCCTAAAAAACTGTCCCGAAGTCTTGCTTCTTGGGATGGCACACATTAACACTGCATTTAACCTCCTCCAATATGAAGTGTTGTCGACTGTTTTTCCCATGATAGTTGGGAATGCCACAAGAAGTGGTATAATTCTTCACCTCTGGAACGTTAATCCTAATCTTGTCTTGCGGGCATTTATGGACATCCACAATACGGATCCAGAAAACATGACTAGAATTTTGGGCATTTCCCAAGAGCTTAAGATTTTTTCATCAGTTTTGGACATGACTCCATTTCCATTCAGTATTAAACTTGCTGCCCTTGCTTCTGGGAAGGAACAAATAAATCTTGAGAAATGGTTAAATGATAATCTGAGCACATATAAAGATGCTTTTTTTGAGGAGTGCCTGAAGTTCCTGAAAGAAATTCCATTTGGTGCAGCACAAGATGCTCCCACAAATCCCCCTCAACATTCTGGTGCTGCTGTGAATGCTTATTTGGAGACGAGTTCAATATTTTTCAAGGTTCTTCAATCCCAGACTGGGCAGAATATCTCTCGCCAGCTTTCAGAGGAAATGAAAAGGTTGCATGCAGCATCCATGCATGTTAATCCTAGACTGCAGAATGGTGGAGCTACAGATTCTTCAACATCTGATGTTTATCCAGATGATATAGAGAAAGAAGCAAACTCTTACTTCCATCAAATGTTTTCTGGGCAGTTGACCATTGATGAGATGGTTCAAATGCTTGCTCGTTTCAAGGAATCTTCTGAAAAAAGGGAACAATCTATCTTTGAGTGCATGATAGCAAATCTGTTTGAGGAGTACAAGTTCTTCCCGAAGTATCCAGAAAAGCAGCTTAAAATTGCTGCAGTTCTCTTTGGATCCCTAATAAAGCATCAGCTTGTAACCCATCTTACACTTGGTATTGCCCTGCGTTGTGTTTTGGATGCATTGCGTAAATCTGCAGATTCAAAAATGTTTGTGTTTGGGGCCAAGGCACTGGAGCAGTTTGTGGACCGTTTGATAGAGTGGCCACAGTACTGCAACCATATCTTGCAAATATCTCATCTGCGTGGCACTCATGCAGATCTTGTTGCATTCATTGAGCATGCTCTTGCCAAGATCTCATCAAGTTACTCGGAATCGAATGGAGGCAACAGTGCTTCTACTGATCAGCACAAAGGATCCAGTCAGGCTACCTTGGAAAACATGGAGACGTCTGAGTCCTCATGGAAGCTAATGGGATCTAGCACTACACAACTTGGACAGCAACTCTCTTCTCCAATGCAGCTGCAACAGAGACATCAAGGTTTTCTTGATGACAGGCATAAAGCTGTGGCACCTTCAGTTAGTAGCTACACGAAGCCCCTTCTATCTCCTGCTGGGCAGCCTTCACTTGTTTCCACGCATGATGTAGTTGGTAATCAGAAGCAGTCCCTGCAAACGGTGGCATCTCAGAATGCAGCCAGTGGGCCAGCAACTCTGTCACCCTCTCCGGGGTTTCTGCGTCCCTCCAGAGGAATAGCATCTACTGGTATGCTTAGGCAGCACTCATATAACACAGGGTTTGGTTCTGCTTTGAACATTGAAACACTTGTTGCAGCTGCTGAGAGAAGGGATACTCCCATAGAGGCTCCCACTTCGGAGATCCAGGACAAGATATTATTTATGATCAATAATATCTCAGTTACAAATATCGAAGCTAAAGCAAAAGAGTTTACTGATATTCTGAAAGAACAGTACTATCCATGGTTTGCACAATATATGGTGATGAAGAGAGCAAGCATTGAGCCAAATTTCCACGATTTGTACTTGAAGTTCTTAGACAAGGTTAATTCAAAAACCTTGAATAAGGAGATCGTAAAAGCTACTTACGAGAACTGCAAGGTCCTTTTAAGATCCGAGCTTATAAAATCAAGTTCAGAAGAGCGTTCCTTGTTGAAAAATCTTGGTAGCTGGCTTGGGAAATTTACAATTGGCAGAAATCAAGCATTAAGGGCTCGGGAAATAGATCCCAAATTCTTAATAATAGAGGCGTATGAGAAGGGATTGATGATTGCAGTTATTCCATTTACCTCCAAGATTCTGGAACCATGCCAGAGCAGTCTCGCATATCAACCTCCCAATCCTTGGACCATGGGTATTCTTGGTTTACTTGCTGAGATTTATGCACTGCCCAATTTAAAGATGAACCTTAAGTTTGACATTGAGGTCTTATTTAAGAACCTTGGTGTGGATATGAAAGACGTTAAACCAACTTCTCTTCTGAAAGATCGGGTTAGGGAAGTAGAAGGAAATCCTGATTTTTCCAACAAAGATGTTGGGTTATCCCAGCCACAAATGGTTGCTGAAGTCAACTCAGGAATGGTTCCTACATTAAGTCAAGTTGAGCTGCAGTCCGAGGTTGCCAATCCGTCTCACCCTGGTGGCCATTCAACTGTAATATCTCAGTATACTGCTCCCCTTCACCTTGCTCCGGGTCTGTTGGTGGAGGATGAAAAAATGGCAGTCTTAAGCTTATCTGAACGGCTTCCTTCTGGTCAGGGATTGTCACAAGTTACTCCTTCCCAGTCATCGTTCTCTGTTAGTCAGCTGCCCACACCAATCCCTAATATCGGAACTCACGTTATTGTCAATCAAAAGCTTAATGCTTTGGGCCTACAAGCGCCCTTTCAGAGAGTTGTTCCAGCGGCTATGGAGAGGGCCATCAAAGAGATAATGTCTCCAGTTGTTCAGCGCAGTGTTACTATAGCAATTCAGACAACAAAAGAACTTGTTTTAAAGGACTATGCCATGGAATCAGATGAAAGCCGCATATATAATGCTGCGCACTTGATGGTGGCAAGTCTAGCAGGAAGTTTAGCTCACGTCACATGCAAGGAACCTCTTCGTGTTTCCATTTCAAATCACCTGAGAAATTTGCTTCAGTCCTTAAATCTTGCAAGTGAACTTCTTGAACAAGCTGTGCAGCTTGTTACAAATGATAACCTTGATCTAGGTTGCGCAGTGGTTGAACAAGCTGCAACGGAGAAGGCACTGCAAACTATTGATGGGGACATAGCTGGGCAGCTTGCTCTAAGAAGGAAGCATAGAGAGGGTGTTGGTCCTACATATTTTGATGCAAGTACTTATACACAAGGACCTATGGGTGTAGTACCAGAAGCCCTCCGCCCTAAACCTGGTCGCTTGTCTCTTTCGCAACAGAGAGTTTATGAGGATTTTGTTAGGTTTCCATGGCAAAATCAATCAAGCCAGAGTTCAAATGCCATGCCTGCTGGTCCACCTGCTTCATCTGGGGGTTCTGTTAGTTCTGGCTTGGCTCATGCTTATGGATCAACTCCAGGACAGCTCAATACGGGCATATATTCATCTGCACAAGGGGGGCCAGGATTCACTACAGTTGCACAGCCCCTTGATCTAATTTCTGAGGAGATGGACCCTGGTTCAGCACAGCTTCTTAGTGCTTCCCCTGCTCATCTTGGGGCATCCGATGCTGTTATCCAGCATGGTTCTGAAATTAATGCCGTTGTTTCTTCATTTCCTTCAAGTGCTGCAGTCCCTGAATTGCATTCGGTCGAACCTTCTAGTGCTGTAAAAGAACTGGGAGCTACTGCACAGCCATCACCTACATCTTCTGCAACAGAGCGCCTGGGAGGTAGCATGTCAGAACCTTTATTGACCGCTGGGGATGCATTGGACAAGTACCAAGTCGTGGCACAGAAGCTGGAAACTCTGGTAGCTAGAGACGCCAGAGACGCAGAAATTCAGGGAGTTATTGCCGAGGTTCCTGAAATCATTCTCAGATGTGTAAGCCGAGATGAGGCTGCCTTGGCTGTGGCCCAAAAGGTTTTTAAGAGTTTATATGAGAATGCATCAAACAATACACATGTTGGTGCTCATCTTGCAATTCTGGTTGCCATTCGAGATGTTTGCAAGTTTGTCGTCAAGGAGCTTACGAGTTGGGTGATTTACTCAGATGAGGAGCGTAAGTTCAACAAAGATATAACTGTCGGCCTCATTCGTTCTGAATTGCTAAACCTTGCAGAGTATAATGTGCACATGGCAAAGCTTATTGATGCAGGACGGAATAAAGCTGCTACGGAGTTTGCAATTTCTCTTCTCCAAACCTTGGTGGTTCAGGAATGTGGAGTTAGTTTGTCAGAACTCCACAATCTTGTTGATGCCTTGGCAAAGCTTGCGACGAGGCCTGGATCTCCTGAATCCTTACAACAGTTGGTTGAGATTGCCAGGAATCCTGCTGCTAATGCCGCTGCTCTGACGGGTTTTGCTATTAACAAGGAGGAGAAGGCCAGACAGTCTAGAGACAAAAAGGCTTCTTCTGTTCGTTCAATGACAAGTAGGGAAGACTATAACAATGCTGAGTCTGTGGCGGCAGATCCTGCTGGTTTTCGTGAACAGGTTTCTGTTCTCTTTGGTGAATGGTGTCGGATTTGTGAAATCCCTGGTACAAATGATGCTGCTTATACCCATTACATATCTCAGTTGCAGCAAAGTGGATTGCTCAAAGGTGATGATATGTCGGATCGCTTTTTCCGTATACTCACGGAACTTTCTGTAGCACATTGCCTCTCTTCTGAGGTGGTTACTCCAGGCTCATTGCCACTGCAACCACCTCAACAAGTTCAGCTTCTATTATATATTGCTATCGATATGTATTCAAAGCTAGTCTTTCTAATCCTGAAGTACTGTGTGGTGGATCAGGGATCAAATAAAGTCTTTCTTCTGCCCAAGATTCTCTCGGTAACTGTGAGAGTCATCCAAAAAGATGCAGAGGAGAAGAAGGCGGCTTTTAATCCTAGGCCCTATTTCAGGCTGTTCATTAATTGGCTTTTGGACCTTGGTTCTCCTGACCCCGTCCTTGATGGTGCCAACTTTCAGGTGTTGGCGGCATTTGCAAATGCTTTCCATGCCTTGCAGCCTCTGAAAGTACCTGGTTTCAGCTTTGCATGGCTTGAGCTGGTGAGTCACAGGAGTTTCATGCCAAAATTGCTCAATGGGAACCCTCAAAAGGGTTGGCCTTTTGTTCAACGTTTGCTGGTAGACTTGTTCAAATTCATGGAACCTTACTTAAGGAATGCTGAACTGGGGGAACCAGTTCACTTTCTCTACAAAGGCACTCTGAGGGTGCTGTTGGTACTGCTTCATGATTTCCCTGAGTTCCTATGCGATTATCATTTCAGCTTCTGTGATGTCATTCCCCCCAGCTGCATCCAGATGCGAAATGTTATACTTAGTGCATTTCCACGCAACATGAGGTTGCCTGATCCTTCTACTCCCAATTTAAAGATTGATCTGCTAGCAGAAATCAGCCAGTCACCACGTATTTTCTCTGAGGTTGATGCTGCTTTGAAAGCAAAACAGATGAAGGCTGACATCGATGAGTATCTGAAGACAAGGCAACAAGGGTCCTCGTTCTTGGCGGAGCTGAAGCAGAGATTGCTGCTTCCTCAAGGCGAGGCAGCACAGGCTGGGACCCGGTACAATGTACCCTTGATCAACTCCCTCGTGCTTTATGTGGGTATGCAGGCCATCCAGCAACTACAGACCAAGACTTCACCTCCTCATGCTCCACAGATGACCCACACTGCTCCAATGGATATTTTCTTGGTGGGCGCTGCCATGGATATCTTCCAGACTCTGATAGTGGACCTAGATACGGAAGGGCGCTACCTCTTTCTAAATGCAGTTGCCAATCAACTGCGCTACCCCAACAACCACACACATTATTTCTCCTTTGTCCTCCTTTACTTGTTTGCCGAAGCAAACCAGGAAATCATTCAGGAGCAAATAACGAGAGTATTGTTGGAACGTCTGATCGTTAATCGACCTCATCCCTGGGGCCTGCTCATCACTTTCATCGAGCTCATCAAGAATCCTCGATATAACTTCTGGAGTCGATCGTTCACTCGGTGTGCGCCAGAAATTGAAAAACTATTTGAATCTGTCTCAAGATCATGTGGGGGCCCAAAAGCCGTGGACGAGAGCTTAGTTTCTGGAGGGATATCTGACAACACACATTGA 7386 44.37 MLPFSSTVSNQIRFLLQSWNESNFDSVFYELCQFVDYGSEGSILLLQTCLDHMNFHGGDMQSRQLKPDFLAAIFRYLLDKPNFSTVFCEALSLALLINEGFLRDLSKELHLSVSEKIGIGLALSDSENLDIRMSGQNFCIAQIEELFANPASIDSHEQIQNIAIFLYRSEGLAKHVDSFMQMLSLLQQKQTTPFILAPLLSDDLCEANSLRNLDLFYECSENDFDAVLAEIEKEISMADIMKELGYGCTANASHCKEMLSLFLPLTDVTLARILGTIARTHVGLEDVNNTYSTFCSALGSSSSSADLSWLSSWNVDVLVDSIKQLAPDTDWIHVMENLDHEGFYFPNEEAFSFFMSVYANACRDPFPLHAICGSVWKNAEGQLSFLRYAVSAPPEIYTFSHSVRQLAYVDEVHGHKLPHGHLNQAWLCLDLLEVLCQLAESGHAGSVRSMLEYPLKNCPEVLLLGMAHINTAFNLLQYEVLSTVFPMIVGNATRSGIILHLWNVNPNLVLRAFMDIHNTDPENMTRILGISQELKIFSSVLDMTPFPFSIKLAALASGKEQINLEKWLNDNLSTYKDAFFEECLKFLKEIPFGAAQDAPTNPPQHSGAAVNAYLETSSIFFKVLQSQTGQNISRQLSEEMKRLHAASMHVNPRLQNGGATDSSTSDVYPDDIEKEANSYFHQMFSGQLTIDEMVQMLARFKESSEKREQSIFECMIANLFEEYKFFPKYPEKQLKIAAVLFGSLIKHQLVTHLTLGIALRCVLDALRKSADSKMFVFGAKALEQFVDRLIEWPQYCNHILQISHLRGTHADLVAFIEHALAKISSSYSESNGGNSASTDQHKGSSQATLENMETSESSWKLMGSSTTQLGQQLSSPMQLQQRHQGFLDDRHKAVAPSVSSYTKPLLSPAGQPSLVSTHDVVGNQKQSLQTVASQNAASGPATLSPSPGFLRPSRGIASTGMLRQHSYNTGFGSALNIETLVAAAERRDTPIEAPTSEIQDKILFMINNISVTNIEAKAKEFTDILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKTLNKEIVKATYENCKVLLRSELIKSSSEERSLLKNLGSWLGKFTIGRNQALRAREIDPKFLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRVREVEGNPDFSNKDVGLSQPQMVAEVNSGMVPTLSQVELQSEVANPSHPGGHSTVISQYTAPLHLAPGLLVEDEKMAVLSLSERLPSGQGLSQVTPSQSSFSVSQLPTPIPNIGTHVIVNQKLNALGLQAPFQRVVPAAMERAIKEIMSPVVQRSVTIAIQTTKELVLKDYAMESDESRIYNAAHLMVASLAGSLAHVTCKEPLRVSISNHLRNLLQSLNLASELLEQAVQLVTNDNLDLGCAVVEQAATEKALQTIDGDIAGQLALRRKHREGVGPTYFDASTYTQGPMGVVPEALRPKPGRLSLSQQRVYEDFVRFPWQNQSSQSSNAMPAGPPASSGGSVSSGLAHAYGSTPGQLNTGIYSSAQGGPGFTTVAQPLDLISEEMDPGSAQLLSASPAHLGASDAVIQHGSEINAVVSSFPSSAAVPELHSVEPSSAVKELGATAQPSPTSSATERLGGSMSEPLLTAGDALDKYQVVAQKLETLVARDARDAEIQGVIAEVPEIILRCVSRDEAALAVAQKVFKSLYENASNNTHVGAHLAILVAIRDVCKFVVKELTSWVIYSDEERKFNKDITVGLIRSELLNLAEYNVHMAKLIDAGRNKAATEFAISLLQTLVVQECGVSLSELHNLVDALAKLATRPGSPESLQQLVEIARNPAANAAALTGFAINKEEKARQSRDKKASSVRSMTSREDYNNAESVAADPAGFREQVSVLFGEWCRICEIPGTNDAAYTHYISQLQQSGLLKGDDMSDRFFRILTELSVAHCLSSEVVTPGSLPLQPPQQVQLLLYIAIDMYSKLVFLILKYCVVDQGSNKVFLLPKILSVTVRVIQKDAEEKKAAFNPRPYFRLFINWLLDLGSPDPVLDGANFQVLAAFANAFHALQPLKVPGFSFAWLELVSHRSFMPKLLNGNPQKGWPFVQRLLVDLFKFMEPYLRNAELGEPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISQSPRIFSEVDAALKAKQMKADIDEYLKTRQQGSSFLAELKQRLLLPQGEAAQAGTRYNVPLINSLVLYVGMQAIQQLQTKTSPPHAPQMTHTAPMDIFLVGAAMDIFQTLIVDLDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAEANQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKAVDESLVSGGISDNTH 2461
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00981 2461 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1339 1479 IPR024557 -
Eupl14g00981 2461 FunFam Ccr4-Not transcription complex subunit 964 1212 - -
Eupl14g00981 2461 FunFam Transcription regulator 1907 2208 - -
Eupl14g00981 2461 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 646 823 IPR032193 -
Eupl14g00981 2461 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 991 1210 IPR032191 -
Eupl14g00981 2461 FunFam Transcription regulator 658 826 - -
Eupl14g00981 2461 Gene3D - 964 1212 - -
Eupl14g00981 2461 Gene3D - 2205 2436 - -
Eupl14g00981 2461 FunFam CCR4-NOT transcription complex subunit 1 2205 2436 - -
Eupl14g00981 2461 Gene3D - 1906 2204 - -
Eupl14g00981 2461 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 479 625 IPR032194 -
Eupl14g00981 2461 MobiDBLite consensus disorder prediction 929 950 - -
Eupl14g00981 2461 Gene3D - 658 825 IPR038535 -
Eupl14g00981 2461 Pfam CCR4-Not complex component, Not1 2074 2437 IPR007196 -
Eupl14g00981 2461 CDD NOT1-connector 1674 1862 - -
Eupl14g00981 2461 MobiDBLite consensus disorder prediction 1643 1668 - -
Eupl14g00981 2461 MobiDBLite consensus disorder prediction 829 878 - -
Eupl14g00981 2461 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 5 2443 IPR040398 GO:0000288(PANTHER)|GO:0000932(PANTHER)|GO:0017148(InterPro)|GO:0030015(PANTHER)|GO:0030015(InterPro)|GO:0060090(PANTHER)
Eupl14g00981 2461 MobiDBLite consensus disorder prediction 1530 1555 - -
Eupl14g00981 2461 MobiDBLite consensus disorder prediction 1649 1666 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00981 K12604 CCR4-NOT transcription complex subunit 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:14621223 Eupl14g01073 Eupl-Chr14:18641845 wgd