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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g00984 ATGTCGCCAGAGATGGAGATGTACGGACTTCCTGCCTCTGATTTCTTCCACATCGACGACCTCCTCGACTTCTCAAACGACGACCTCTTCTCCTCCACTACCACCACCAACGATTCCCACCTCCCCGCACAGGAAAATCCATCCGGAATCCGCCCTTCCACCACCGCCACCGACATTAATAACCAAAACCGGACACCTGATTTCCCCGACGATCTCTGCGTTCCTAGCGACGATGTAGCAGAGCTGGAATGGCTGTCGAAGTTCGTGGACGACTCGTTCTCTGACTTCCCGATCAACGATCTTGCCGGAAATACAAACTTCCGGCATGATGCCTCAGTTCCTGGCCGAGCTAGGACTAAACGCTCTAGAGCAGCGACGACGCATAACAGCTGGACTTTCTTGCCAGAATCTGACATTTTGGCTACTGGTAAGTCTAAGCAAACTAGTTCAAATAACAATAAGAAGAAGGAGAGTTCTTCTTCTTCGGCATCTTCAGGTGTTGCCGCCGGAGATCAGTTCTCCTCGTTGTCGCCTTCATCAGGAGGACGTAAATGCACACACTGCGAATCAGAGAAAACGCCGCAGTGGCGCACAGGACCAATGGGACCTAAGACGCTATGCAACGCGTGTGGCGTACGATACAAATCAGGTCGACTTGTTCCGGAGTACCGTCCGGCGGCGAGTCCAACGTTCGTGTTAACTCAGCACTCCAACTCTCATCGGAAAGTAATGGAACTCCGGCGACAGAAAGAAACTGTCCGGCAAGATAACAACCGCCACGAGTTCTACCACCACCCTCATCAAGACTTCAAGGTTTGCTGA 822 52.07 MSPEMEMYGLPASDFFHIDDLLDFSNDDLFSSTTTTNDSHLPAQENPSGIRPSTTATDINNQNRTPDFPDDLCVPSDDVAELEWLSKFVDDSFSDFPINDLAGNTNFRHDASVPGRARTKRSRAATTHNSWTFLPESDILATGKSKQTSSNNNKKKESSSSSASSGVAAGDQFSSLSPSSGGRKCTHCESEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKETVRQDNNRHEFYHHPHQDFKVC 273
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g00984 273 PIRSF Txn-fac-GATA-plant 5 272 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Eupl14g00984 273 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 243 - -
Eupl14g00984 273 MobiDBLite consensus disorder prediction 34 67 - -
Eupl14g00984 273 Pfam GATA zinc finger 185 219 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00984 273 ProSiteProfiles GATA-type zinc finger domain profile. 179 215 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00984 273 CDD ZnF-GATA 184 231 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00984 273 MobiDBLite consensus disorder prediction 104 129 - -
Eupl14g00984 273 SMART GATA-3 179 229 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00984 273 Gene3D - 181 263 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Eupl14g00984 273 PANTHER GATA TRANSCRIPTION FACTOR 15 251 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Eupl14g00984 273 ProSitePatterns GATA-type zinc finger domain. 185 210 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Eupl14g00984 273 FunFam GATA transcription factor 176 261 - -
Eupl14g00984 273 MobiDBLite consensus disorder prediction 142 184 - -
Eupl14g00984 273 MobiDBLite consensus disorder prediction 142 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g00984 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:28786054 Eupl14g00984 Eupl-Chr14:14715912 dispersed
Eupl Eupl-Chr14:14715912 Eupl9g00190 Eupl-Chr9:6607023 dispersed
Eupl Eupl-Chr13:26934488 Eupl14g00984 Eupl-Chr14:14715912 transposed
Eupl Eupl-Chr14:14715912 Eupl14g01070 Eupl-Chr14:18570544 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g01126 . 25 135 C2C2-Gata Transcription Factor family AT5G49300 43.75 4.77e-20 79.7
Eupl14g01144 . 1 508 C2C2-Gata Transcription Factor family AT4G17570 50.376 3.51e-138 408.0
Eupl9g00190 . 48 331 C2C2-Gata Transcription Factor family AT5G25830 53.584 9.11e-91 273.0
Eupl3g00544 . 10 228 C2C2-Gata Transcription Factor family AT4G36240 39.837 2.80e-44 147.0
Eupl1g01505 . 20 263 C2C2-Gata Transcription Factor family AT4G32890 35.831 1.26e-43 150.0
Eupl3g01897 . 17 294 C2C2-Gata Transcription Factor family AT3G50870 43.86 1.26e-55 178.0
Eupl13g01311 . 77 249 C2C2-Gata Transcription Factor family AT4G34680 40.437 3.17e-40 136.0
Eupl4g00483 . 13 119 C2C2-Gata Transcription Factor family AT5G49300 40.367 2.80e-16 73.6
Eupl7g00591 . 20 265 C2C2-Gata Transcription Factor family AT4G32890 38.462 5.79e-43 145.0
Eupl1g00664 . 80 261 C2C2-Gata Transcription Factor family AT4G32890 40.708 9.09e-43 146.0
Eupl14g00984 . 1 251 C2C2-Gata Transcription Factor family AT2G45050 51.351 6.04e-74 225.0
Eupl8g00888 . 1 509 C2C2-Gata Transcription Factor family AT4G17570 52.166 4.07e-152 444.0
Eupl10g00766 . 34 102 C2C2-Gata Transcription Factor family AT4G16141 39.726 4.97e-06 40.8
Eupl10g00924 . 14 331 C2C2-Gata Transcription Factor family AT5G25830 51.343 3.50e-91 274.0
Eupl13g00253 . 17 294 C2C2-Gata Transcription Factor family AT3G50870 44.211 2.00e-56 180.0
Eupl13g00358 . 1 331 C2C2-Gata Transcription Factor family AT5G66320 54.167 5.56e-84 256.0
Eupl10g01100 . 118 230 C2C2-Gata Transcription Factor family AT4G26150 47.107 8.04e-26 103.0
Eupl9g00412 . 118 352 C2C2-Gata Transcription Factor family AT4G26150 41.597 2.39e-39 139.0
Eupl5g01578 . 11 291 C2C2-Gata Transcription Factor family AT1G08010 36.474 5.08e-47 160.0
Eupl5g00406 . 92 129 C2C2-Gata Transcription Factor family AT2G18380 81.579 4.23e-17 75.5
Eupl14g01081 . 1 508 C2C2-Gata Transcription Factor family AT4G17570 50.376 5.02e-138 407.0
Eupl7g00587 . 7 262 C2C2-Gata Transcription Factor family AT3G24050 41.729 2.53e-43 145.0
Eupl14g01070 . 1 251 C2C2-Gata Transcription Factor family AT2G45050 51.969 1.66e-73 224.0
Eupl3g02048 . 2 332 C2C2-Gata Transcription Factor family AT5G66320 51.642 2.25e-73 233.0
Eupl7g01482 . 32 139 C2C2-Gata Transcription Factor family AT5G49300 66.667 5.69e-41 131.0
Eupl12g00938 . 38 149 C2C2-Gata Transcription Factor family AT3G06740 68.103 3.25e-46 145.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl GATA 7.4e-15 CL0839 TF C2C2-GATA