AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl14g01000 ATGAAAGGAGGAGAAATGTCTAACTACATTACCCAAGTTGCCATCTTCATTCTCTATATTGACGAGTGTGGCAACCCAAACAACATACCCTGCCATGCGGATGCGATTTGCGAAAATAACCCTGGAGATTTTAAATGCTCTTGTAAAGCTGGCTACCATGGTGAGGGTAAAATAGATCAAGGAACTGGCTGCACACGTGATACTAAATCATTTCCAGTGATACACCTCGTTCTAGCAGCAGTCCACACCTCCATCATCATCAAGACCCAGCAGCCACGTCTTCATCAACGCTCCATCCCTCATCCATCACGTCCTCACCAAACCATTGCCGCCCCTACCAAAACAACTCCACCGCCTGCTGCTGCCTTCTTGCACCACCTATATCGCCCATCTCCATCATCCCAAATCGTTGCATACAGCAACATCAAGAAGGTAGGGTCCTACTGGATGTTGAAGGTGGTTACTGGCCGAACTAATGAGAAGGAGTGCAGGCGGTGTGGGAAGATAAGGTTTTACAGTCCAATTAATGGACTGATGCGTGGAGGGGAAGTGCGAAACGAGGAAGATGGAGCGGTAGAAGAGGCAACAACCAATGGAGTTCTCCAGCCAAACTATTACCTTTGTGGTTCAGCCAAGAGGGCATTGAGGGGGGGAATGATGTGCATGTTGATGGTGTGCATTGAGGGCAACGGTGGTTCCCAAGAGATTTTGCAAGTGGTGAAGACACCCGTTCTATATATCCAAGAAGAGAGACGCTGGTCATGTCCACGAGAGGGTTGA 780 48.59 MKGGEMSNYITQVAIFILYIDECGNPNNIPCHADAICENNPGDFKCSCKAGYHGEGKIDQGTGCTRDTKSFPVIHLVLAAVHTSIIIKTQQPRLHQRSIPHPSRPHQTIAAPTKTTPPPAAAFLHHLYRPSPSSQIVAYSNIKKVGSYWMLKVVTGRTNEKECRRCGKIRFYSPINGLMRGGEVRNEEDGAVEEATTNGVLQPNYYLCGSAKRALRGGMMCMLMVCIEGNGGSQEILQVVKTPVLYIQEERRWSCPREG 259
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl14g01000 259 ProSiteProfiles EGF-like domain profile. 19 55 IPR000742 -
Eupl14g01000 259 Pfam EGF domain 27 57 IPR024731 -
Eupl14g01000 259 MobiDBLite consensus disorder prediction 91 112 - -
Eupl14g01000 259 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 37 48 IPR000152 -
Eupl14g01000 259 FunFam Fibrillin 2 17 59 - -
Eupl14g01000 259 CDD EGF-CA 20 54 - -
Eupl14g01000 259 SMART egfca-6 20 65 IPR001881 GO:0005509(InterPro)
Eupl14g01000 259 SUPERFAMILY EGF-Laminin 20 55 - -
Eupl14g01000 259 Gene3D Laminin 10 66 - -
Eupl14g01000 259 SMART egf-5 22 65 IPR000742 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl14g01000 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:15622167 Eupl14g00004 Eupl-Chr14:79598 dispersed
Eupl Eupl-Chr14:15600511 Eupl14g01000 Eupl-Chr14:15622167 proximal